Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2487 ATGGTATCAGGGTCTGGCGTATGCGCGAAGCGCGTGGTTGTTGACGCGCGCCACCACATGCTAGGTAGGCTGGCTTCGATTGTGGCGAAGGAACTGCTCAATGGCCAAAAGGTGGTGGTAGTGCGGTGCGAGGAAATCTGCATCTCTGGTGGCTTGGTCCGTCAGAAGATGAAATACATGCGATTCCTCCGTAAGCGGATGAATACTAAGCCTTCTCATGGCCCTATCCACTTTCGTGCCCCTTCCAAGATTTTCTGGCGTACTGTTCGTGGAATGATACCACATAAGACAAAGCGTGGGGCAGAGGCTCTTGCAAGATTGAAGGTCTTTGAAGGCATACCTCCTCCATATGACAAAACGAAGAGGATGGTTGTCCCTGATGCCCTAAAGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTTTGGTGGGTAAATTATCTTCCGAAGTTGGATGGAACTATTATGATACCATCAAGGAATTGGAGAAGAAAAGAAAGGAGAGAGCAAAATTGGTTTATGAGAAGAAGAAGCAGATTGCTAAATTAAGGTCGAAGGCCGAGAAAATTGCTGAGGACAAGCTTGGTTCCCAACTGGAGATCCTAGCTCCAACCCTTAGTATGATAATGTTGGAAATTGCCATTGATTTCTGCCTCCGTTATTATATTCGCGCCAATTTGTCTTAA 684 0.4678 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAEALARLKVFEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCLVGKLSSEVGWNYYDTIKELEKKRKERAKLVYEKKKQIAKLRSKAEKIAEDKLGSQLEILAPTLSMIMLEIAIDFCLRYYIRANLS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2487 227 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Acco01g2487 227 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Acco01g2487 227 FunFam 60S ribosomal protein L13a-4 8 154 - -
Acco01g2487 227 PANTHER RIBOSOMAL PROTEIN L13 2 184 IPR005822 GO:0003735|GO:0005840|GO:0006412
Acco01g2487 227 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Acco01g2487 227 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Acco01g2487 227 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Acco01g2487 227 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Acco01g2487 227 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Acco01g2487 227 FunFam 60S ribosomal protein L13a 155 204 - -
Acco01g2487 227 Gene3D - 156 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2487 Acco-ChrAcco01 41933083 41935481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2487 1 203 Cytoplasmic Ribosomal Protein Gene Family AT4G13170 86.700 2.50e-135 377