Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2455 ATGGTAGCCGAAAGGTCTCTATCAGTTGCGGGATTTTCTCAAAGTTCATCAAATCGCCGAGAGATTGATTTGAAAGATTTGAAGAAGGAAAAATTCAGGATTCAAAAAAAGAAAAGGGAGAATATGAATTCTTTTTCATATGTTCCACCTGGATTTAGGTTCCATCCCACAGATGAGGAACTTGTTGATTACTACCTGCGGAAGAAAGTCACTTCAAGAAGGATTGATCTTAATGTCATCAAAGATGTGGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGGATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTCAGTCATAAAGACAAGAAATATCCAACAGGGACTCGAACAAATAGAGCCACAGCTGCAGGCTTCTGGAAAGCAACAGGAAGAGATAAAGCTATCTATTCCAAGCATGATCTCATTGGGATGAGGAAAACCCTAGTTTTCTATAAGGGTCGAGCCCCTAATGGACAGAAATCTGATTGGATTATGCATGAGTATCGCCTCGAAACCGATGAAAATGGTACCCCTCAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAATAACAACCATAAGGAAAGTGAGTGAGCATGACTCTCCTTGTTGGTATGATGACCAACAAGTCTCAACTTTCATGCAAGACTTGGACTCACCAAAGCACCAAAATCCTCATCCTTCTCATCAACCTAATTTGATGTACCACCAAATCCCCATCAATACTTATCCTTGCAAGAAAGAGCTGGACCATAATCCTCATCATCACGTGCCTTTGCTTCACCAGCTTCAAACTCGCCACCACTTCCTCCCCCAGCTTCCGCTACTCGATTACCAGAACCCAAAATTGCTTCAATCTTCGGCTCCCAATGCTGTAAACCCTTGCCGTAGCAACAGCAACCTAATGGCACAATATGGTCTTGATCAAGTGATGAACCATGCTGTGCCTGAAGAACATCAGCAAGCTTTTCCAGCGGCTGCCGTTTATGGCAGTAGTAGCCAAGAACAAGTGGCGGCGGATGATGAACAAGTGACCGATTGGCGGGTACTCGACAAGTTTGTCGCCTCACAACTTAGTCAAGATGTTCCTTGTAATAAGGACCACAACAACAACAATAATGCAGGCACAAGCAGCAGCAGCAACAATATTTTTCAGAACATGGACAATACTGCCAGTAGTGTACAATTCAGACCATCAAATTTGGAAAAGCAAGAAATGGTTCCTGAAAATGCCTCAACTTCAACCTCAAGTTGCCCAATTGATTTGTGGAAATAG 1302 0.427 MVAERSLSVAGFSQSSSNRREIDLKDLKKEKFRIQKKKRENMNSFSYVPPGFRFHPTDEELVDYYLRKKVTSRRIDLNVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRITTIRKVSEHDSPCWYDDQQVSTFMQDLDSPKHQNPHPSHQPNLMYHQIPINTYPCKKELDHNPHHHVPLLHQLQTRHHFLPQLPLLDYQNPKLLQSSAPNAVNPCRSNSNLMAQYGLDQVMNHAVPEEHQQAFPAAAVYGSSSQEQVAADDEQVTDWRVLDKFVASQLSQDVPCNKDHNNNNNAGTSSSSNNIFQNMDNTASSVQFRPSNLEKQEMVPENASTSTSSCPIDLWK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2455 433 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 48 340 - -
Acco01g2455 433 Pfam No apical meristem (NAM) protein 49 176 IPR003441 GO:0003677|GO:0006355
Acco01g2455 433 Gene3D NAC domain 57 200 IPR036093 GO:0003677|GO:0006355
Acco01g2455 433 MobiDBLite consensus disorder prediction 370 394 - -
Acco01g2455 433 MobiDBLite consensus disorder prediction 413 433 - -
Acco01g2455 433 SUPERFAMILY NAC domain 45 197 IPR036093 GO:0003677|GO:0006355
Acco01g2455 433 FunFam NAC domain-containing protein 57 201 - -
Acco01g2455 433 ProSiteProfiles NAC domain profile. 48 197 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2455 Acco-ChrAcco01 41507145 41512321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2455 42 433 NAC Transcription Factor Family AT1G12260 51.244 3.51e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco01g2455 NAM 6.3e-38 No_clan