Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2454 ATGGATCATCGTCGTCGATCTCTGTTAATATTATTCTTGAGTCTCTTTCTCTTAGCTTGTCTTCTTCCAACAGCCACATCAAGATCAAGAAGAAGACCAAAACAGCCATTGTCTCAGAACATTCAATGGTGGTGCGATCGAACCCCACACCCAGAAACATGCAAATTCTACATGATGAGCCAAAACCACCATGGCCACAGACTGAAACACAAGTCCTACTTCAGAGTCAAGCTAGTTCAGTTAGCTTTGAATCAAGCCCAACAAATGAAATATGAAGCTCATGACTATACCCAAAACGCTGAAACAGAGAAGCTTAAAGCTGTGTTTGGTGTTTGTTTGAAGCTCTGTGATAACACCATCTTCCATCTGAACCGAACCCTCGTAGGGCTCGGATCGAAACATGGAGACCGTCATAATCATCATCGTTGTTCCAATTTGGACGCTCAGACATGGCTGAGTACAGCTCTCACTAACATTCAGACATGCAAGAACGGAGCTAAGGACTTGAAGCTTAGTGTGCCACAGTTTACAGAGGCCAAAACTTTGTGTTACAATGTCACCAAGATGATAAGCAATAGTTTGGCGATAAGCGCAGCGTTTTTGACGAGGCCTGAGAGAGAAGAACTCATGATGAGTGAGAATAATAATAATGTTGTTGATGAGGAGCATGGATATCCGAGGTGGTTTTCGAGGCAGGAGAGGAAGCTGGTGACGGTGTCGGCGTCGAAGATAAAGGCGAATGTGGTGGTGGCGAAGGACGGGTCAGGGCATTTCAAGACGGTGCAGGCGGCGATAGATGCAGCGGCCAAGAGGAAGTACAAGACGAGGTTTGTGATAAGAGTGAAGAAAGGGGTTTATAATGAGAACATAGAGGTTGATAAGACTAACGGTAACATAATGCTGATTGGTGATGGTTTGAGATATACTGTGATTACAAGTTCCAAGAGTACTTCAGATGGCATCACCACCTATAGCACCGCCACTGCTGGCATAGATGGCCCTAACTTGATTGCTCGTGACATATCATTTGTTAACAGTGCTGGTCCTCGTAAGGGACAAGCAGTGGCACTCCGATCAGCCTCCGATCTCTCCGTCTTCTATCGATGTGGCATTGTAGGTTATCAAGACACTGTCATGGCCCATGCACAACGTCAATTCTACAAACAGTGTTACATTTTTGGTACCGTAGATATCATCTTTGGCAATGCGGCCGTAGTTTTTCAAAATTGTGTAATCCTCGTAAGGAGGCCACTATCGGGCCAGGCCAATATGATCACAGCCCAAGGTCGAGGTGACCCGTTCCAAAACACGGGCACCTCATTACAAAATTGCATAATCAAAGCTGCGACGGACCTTCGACCTGCCGTCATCAGTTCAGTCACGACCTACTTGGGCCGGCCTTGGCAAGAATATTCTAGGGTTGTGGTAATGAAGTCCTACATAGATTCCTTGGTAAGCCCATTGGGCTGGTCTAAATGGGGAAATAGTGATTTTGCTCTAAGTACTCTGTATTTTGGGGAATATAAGAACTTTGGACCTGGTTCATCCACAAAAAATAGGGTAAATTGGAAAGGCTATCATGTGATAACTAGTGCAACTGAAGCATCTAGCTTCACCGTGAATGGTCTCATTGCTGGCGGTACCTGGTTGCCTTCAACTGGAGTTCCGTTTACTTCTGGTTTATAG 1686 0.4537 MDHRRRSLLILFLSLFLLACLLPTATSRSRRRPKQPLSQNIQWWCDRTPHPETCKFYMMSQNHHGHRLKHKSYFRVKLVQLALNQAQQMKYEAHDYTQNAETEKLKAVFGVCLKLCDNTIFHLNRTLVGLGSKHGDRHNHHRCSNLDAQTWLSTALTNIQTCKNGAKDLKLSVPQFTEAKTLCYNVTKMISNSLAISAAFLTRPEREELMMSENNNNVVDEEHGYPRWFSRQERKLVTVSASKIKANVVVAKDGSGHFKTVQAAIDAAAKRKYKTRFVIRVKKGVYNENIEVDKTNGNIMLIGDGLRYTVITSSKSTSDGITTYSTATAGIDGPNLIARDISFVNSAGPRKGQAVALRSASDLSVFYRCGIVGYQDTVMAHAQRQFYKQCYIFGTVDIIFGNAAVVFQNCVILVRRPLSGQANMITAQGRGDPFQNTGTSLQNCIIKAATDLRPAVISSVTTYLGRPWQEYSRVVVMKSYIDSLVSPLGWSKWGNSDFALSTLYFGEYKNFGPGSSTKNRVNWKGYHVITSATEASSFTVNGLIAGGTWLPSTGVPFTSGL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2454 561 SUPERFAMILY Pectin lyase-like 243 560 IPR011050 -
Acco01g2454 561 PANTHER PECTINESTERASE 16 551 - -
Acco01g2454 561 Pfam Pectinesterase 247 546 IPR000070 GO:0030599|GO:0042545
Acco01g2454 561 SMART PMEI_2 36 196 IPR006501 GO:0004857
Acco01g2454 561 NCBIfam pectinesterase inhibitor domain 9 197 IPR006501 GO:0004857
Acco01g2454 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 200 IPR035513 -
Acco01g2454 561 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Acco01g2454 561 Pfam Plant invertase/pectin methylesterase inhibitor 40 196 IPR006501 GO:0004857
Acco01g2454 561 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Acco01g2454 561 Gene3D - 240 561 IPR012334 -
Acco01g2454 561 FunFam Pectinesterase 241 561 - -
Acco01g2454 561 CDD PMEI-like_3 43 202 - -
Acco01g2454 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 200 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2454 Acco-ChrAcco01 41475178 41478132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2454 38 561 Carbohydrate Esterase AT5G51500 54.459 0.0 570