Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2374 ATGAATATGACTCCGGCGAATTTGGCAGGGCAGTTTGGGGACACAACATACACAAAGGTGTTTGTGGGAGGGTTGGCTTGGGAGACTCAGAAGGAGACTATGAAGAAATATTTTGAGCAGTTTGGTGAGATCTTGGAGGCCGTCGTCATCACTGACAAAGCTACTGGCAAATCTAAAGGCTATGGATTTGTTACTTTTCGGGAACCAGATGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTGATTGATGGCAGGAGGGCTAATTGCAACCTAGCTTCTTTGGGTGTCCAGAGATCCAAGCCTTCTACCCCTAAGCATGGAGGAGGCAGGAACTTTAGGGTGATGGGTTCGTTTCAGACAGGATTTGGAGGAGTAGGGTCAACTTTTCCTTCTGCAGCAGCACCAACACTCCCTCATTATGCTCTCCAGCAAGGAACACCTTATAATCTCTATGGGTACTCCCCATACTCACCAGATTACACTTACCCTACGGGTTACTATAGTGTGTATGGAGGAGCAACCCAGTACCCACTATATGGAACTGGACCAGCAGGAGGCATGATGAGCAGTGCTGCCGCTGCGGCCACCGCCATCTACCCATATCTGCAGTTTGGAGAAGGGAGCGGCAGCGGGGTAACCGGCGGCTACACCTCCAGCCAGGGCTATGGTGTCTACTACCCACCACACCTCTTTCAGTACTCTCCCATTACTTCATCTGCCAGTGGCTACCCACAACACTATGGTCCACCCATGTCTCTTGCTCCTTCGCCAGCTTTGCAATCAGTGTGTTTTGCTGTGCCACAGGCGTGA 813 0.5129 MNMTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGKSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVMGSFQTGFGGVGSTFPSAAAPTLPHYALQQGTPYNLYGYSPYSPDYTYPTGYYSVYGGATQYPLYGTGPAGGMMSSAAAAATAIYPYLQFGEGSGSGVTGGYTSSQGYGVYYPPHLFQYSPITSSASGYPQHYGPPMSLAPSPALQSVCFAVPQA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2374 270 PANTHER BOULE-RELATED 4 252 - -
Acco01g2374 270 SMART rrm1_1 19 91 IPR000504 GO:0003723
Acco01g2374 270 SUPERFAMILY RNA-binding domain, RBD 14 125 IPR035979 GO:0003676
Acco01g2374 270 Gene3D - 4 113 IPR012677 -
Acco01g2374 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 102 IPR000504 GO:0003723
Acco01g2374 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 75 IPR000504 GO:0003723
Acco01g2374 270 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 12 99 - -
Acco01g2374 270 CDD RRM_RBM24_RBM38_like 18 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2374 Acco-ChrAcco01 40444367 40450444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2374 3 94 C2H2 Transcription Factor Family AT2G19380 39.130 1.39e-13 68.6