Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2365 ATGGTTGTGAATGAAAGGCCATCAAAGAGGATGAAGAGGAGAGTTTCAGCCGATCTTTATGATTTTCTCACTTTTCCGGCCGCCAGTAACCACTGCTTAGACGATGTGGACGTCGGCGGCCAACCGTTCCGGAAAACCGTTCAGAGTTTTCTTACTAATTATGCTATGGTCACCTATCCACCGTCCTTGTTTTCGTCTTTGATGACGTGGCAGATATTGTTCCGGATCGGAGGACTCGTCGATGGGTCCGATCTTTCACCGGCGTCCGTCACTCTCCACATAGTGGAGGAGGACGTAACTCGATCTCGCTCCTCCGTATACTGTGATCAGTGCCGAGTTGTTGGTTGGAGTGCCCATCCTGTATGTAGAAAGCGATATCACTTCATTATCCGAGCTTCAGCTAATCACATGGATGCATATGAAAGACCTTGCTCTTTGTGTGGGAAATCTACTGGATTATCTGAAGCAAGGTGTAAATGGTGTGACGCCGCGATTACCGTTGAAGATCTTGAGGACTGGGTGTATAGTCAAATTGAAGATAACACTCATCTTCTGCACGGGATTGTCCACTCCAATGGTTATGGGCATTTGCTTACTCTTAATGGAAGAGAGGGTGGTTCAAAGTTTCTCTCTGGGTCTGACATAATGAGTTTCTGGGATAGGCTTTGTGCTTCACTTGCTGTTAGGAAGGTTAGTGTGATGGATGTTTCAAAGAAATTTGGGATGGAATATCGGTTGCTTCATGCAATCACCAATGGGTGTTCTTGGTATGGGAATTGGGGTTATGAATTTGGGACTGGTTGCTATGCTCTGACCCAAGATTCCTACCAAAATGCAGTGAATACCCTGTCAAGCATGCCCCTATCAGATTTATTATTCCAGGATCGGGGGCCCCGAAGTCGCTTACAGTGTGTTATTTTTCTTTATCAATCTCTTGCAGATGCTGAACTTTTAACTATAAAAGATCTATTCTCATTTTTGGTGTCCTTAATTCGTGAGTTCCACAAGCCTTTGACCACAAGTACGTCGAATGCTGAAACTTGCAATGTGTTGTGTGCTTGGACAAGCAATGACGTTGAAGCTGTGCAACAGGCTTTGATCAAGGTACTGCGTGCATCCGCTTCCTCTAGCGGGGCCAAATGGGTGACAAGACGAGCTCTTAAGGGTGCATTAGGTAGGGGTGTTGCATCTCCAGAGCTTCTAGATTACAGTTTGAAAAATCTGGGTGGAAAATTAACTGCCTATGGTATGGTAGTTAGGTCAAGATGCAATCCCACATCTAGTGCTGTGGAGTACAGGCTTGAATCCTTGAATGTTACAGAAAATGAAGTCAGTGCGAATTCAGGATATCCATCAAAAGAGCAAGTGATTGATGATTTGAAATTCTTGCTTGATTCGATTATTCATCCTGATAGGATGGTGAGCTACAGACCCAAGATTATGAGAAAGCGGGTGGCTGATTCGGCAAGGAAGCTCCTTGACTGCAAGCAGTTCATGAAGGATTACAAGCCTGATAAGATGGCAGGTGAAGAAGTGCCTTCATGTATTAGGCTGTGGTGTCATGTTGAGCTTTCCGATCAGCCAAAAGAAGATCCAACCCCTCCTCCAGAACTGATTTTGCTGCCCTTGAATGCTACTGTAGCCGACCTCAAGAACGAAGTGACCAATACTTTTCAAGAAGTTTATGCCATGTATAAGAGGTTTCAAGCCGAGGAACTTCTGGAATATGGGTCCATCAAGGACAACCTCACCGTGAAGTTACTGTTTGGAACAAGTGGGTCTGTCCGAATTTTAGGTAAATGCCATGCAAAACATGGCCTGAACCGCTTCCGAATGGAGAGAGGAACGGAGACTTGGAAAGTTGATTGCCCTTGTGGGGCTAAGGATGATGATGGGGAGAAAATGTTAGCATGTGATACTTGCGGTGTTTGGCAACATACGAGGTGTGCTGGAATTGATAATTCCAATGCTATTCCCTCTAAGTTCGAATGCATGAGATGCATCAAATCATACCGCAAGGATGCCAAGAAACAGACTTTCCCTGTTGAACCAAAAATCCACCCTTTGGATGAAGCAAAAAACTACGCCGTGCATGATGCAGAGATCCACCCTATGGATAAAGCAAAAAGCTACGTAATGCATGGGCCAAACATCCATCCTATGAATGAAGCAAAGATCCACCCTATGGATGAAGCAAAAAGCTACATGATGCATGAGCCAAACATCCATCCCATGAATGAAGTAATTAGCTACACTGTGTATGAAGAGGTTCACCCTATGGTGTATGAAGGGAAAAGCTACGCTGTGTATGAAGCACAAAGCTACACTGCGTATGAAGCAGAGATCCACCCTGTGGTTGAAGCGAATGTAACTTGGAAGCAGAACAGCTCTGTGGATGAAGCAAGAACCCCCAGTAAAGCAAAAACGTCGTGTAGGGGAGAGGTGGTAGCAGCAGATGGTACAGCAGTTGCTTGCAACCTGGCTCTGAACTTTGGCGTTCGCTGA 2505 0.4527 MVVNERPSKRMKRRVSADLYDFLTFPAASNHCLDDVDVGGQPFRKTVQSFLTNYAMVTYPPSLFSSLMTWQILFRIGGLVDGSDLSPASVTLHIVEEDVTRSRSSVYCDQCRVVGWSAHPVCRKRYHFIIRASANHMDAYERPCSLCGKSTGLSEARCKWCDAAITVEDLEDWVYSQIEDNTHLLHGIVHSNGYGHLLTLNGREGGSKFLSGSDIMSFWDRLCASLAVRKVSVMDVSKKFGMEYRLLHAITNGCSWYGNWGYEFGTGCYALTQDSYQNAVNTLSSMPLSDLLFQDRGPRSRLQCVIFLYQSLADAELLTIKDLFSFLVSLIREFHKPLTTSTSNAETCNVLCAWTSNDVEAVQQALIKVLRASASSSGAKWVTRRALKGALGRGVASPELLDYSLKNLGGKLTAYGMVVRSRCNPTSSAVEYRLESLNVTENEVSANSGYPSKEQVIDDLKFLLDSIIHPDRMVSYRPKIMRKRVADSARKLLDCKQFMKDYKPDKMAGEEVPSCIRLWCHVELSDQPKEDPTPPPELILLPLNATVADLKNEVTNTFQEVYAMYKRFQAEELLEYGSIKDNLTVKLLFGTSGSVRILGKCHAKHGLNRFRMERGTETWKVDCPCGAKDDDGEKMLACDTCGVWQHTRCAGIDNSNAIPSKFECMRCIKSYRKDAKKQTFPVEPKIHPLDEAKNYAVHDAEIHPMDKAKSYVMHGPNIHPMNEAKIHPMDEAKSYMMHEPNIHPMNEVISYTVYEEVHPMVYEGKSYAVYEAQSYTAYEAEIHPVVEANVTWKQNSSVDEARTPSKAKTSCRGEVVAADGTAVACNLALNFGVR 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2365 834 SUPERFAMILY FYVE/PHD zinc finger 613 670 IPR011011 -
Acco01g2365 834 CDD PHD_MMD1_like 622 667 - -
Acco01g2365 834 Pfam PHD-finger 623 669 IPR019787 -
Acco01g2365 834 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 676 - -
Acco01g2365 834 SMART PHD_3 622 668 IPR001965 -
Acco01g2365 834 ProSitePatterns Zinc finger PHD-type signature. 623 667 IPR019786 -
Acco01g2365 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 674 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2365 Acco-ChrAcco01 40181936 40185154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2365 40 667 PHD Transcription Factor Family AT5G22260 29.066 2.41e-81 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco01g2365 PHD 3.6e-08 CL0390