Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2361 ATGGGTTCTTCCAACGGTGGTGTGCCGCCGGGTTTCCGGTTTCATCCGACCGACGAGGAGCTTCTTCATTATTACTTGAAGAAGAAGGTGAACTTTCAAAAATTTGACATGGACGTCATTAGGGAAGTCGACTTGAACAAGATTGAGCCTTGGGACTTGCAAGAGAGGTGTAGAATAGGGTCAACACCACAGAACGAGTGGTACTTTTTCAGCCACAAGGACAGGAAGTATCCGACAGGGTCGAGGACGAACCGGGCAACAAACGCCGGCTTCTGGAAGGCGACGGGGCGAGACAAGTGCATCAGGAACACCTTCAAGAAGATTGGGATGAGGAAGACTCTGGTCTTCTACAGAGGCAGAGCTCCTCATGGCCATAAGACTGACTGGATCATGCATGAATATCGCCTTGAAGAAGCTGACGATGCTCAACCTAATCCCAATGACGATGGGTGGGTAGTCTGCAGAGTGTTCAAGAAGAAGAACCTATTCAAGATTGGAAATGAAGGAAGCTCCATGCATAACACGGACCAGCAACTCAACACTTCCTCAAGCATCAACCAACCTCGCTCCTTCATGCACAGTAGAGAGAACCAATACTTACTTCTTCATCAACAAAACCCTAGAACCTCATCATCTTCTGGCTTCCAACTCGAAAAACCCGAGCTTGCTCTTCATTACCCTCACCCTCACTTGCAAAACCCTCAATACTCTCTCTTCCAGGCTCAACCCCTCCTTCCTCCTGCAACTCACTACACTTCATATTCCTCAGCCCTACCTTCAGACACACCTTCCTTGGCCGCCAAACAACTCATGACAAACCCGGCAGCTGCCGGAGACTGCGATAGTGGGGGTGGCGGCAGTGAGGGCTTGAGGTACCAAGTGTCAGAGACTGCAAATATGGAGGTTGGAACTTGTGAACCCACGGGTCATCAAGAGATTGGAACAACAAGAGAAGATCAAGGGTTTAATGAATGGGGTGTGCTTGATAGGCTTGTGGTAACTTCTCATCATCATCATATCGGAAATGAAGAATCATCCAAAGGGGTTAGGTTTGAGGATGCAGATAATCCACAATCTGTTCATCAGATCAATCATCAGCAGCAGCTTTCATTGCGTGGAGAAGTTGACTTTTGGGGCTATGGAAAGCAATAA 1152 0.4818 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVNFQKFDMDVIREVDLNKIEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTFKKIGMRKTLVFYRGRAPHGHKTDWIMHEYRLEEADDAQPNPNDDGWVVCRVFKKKNLFKIGNEGSSMHNTDQQLNTSSSINQPRSFMHSRENQYLLLHQQNPRTSSSSGFQLEKPELALHYPHPHLQNPQYSLFQAQPLLPPATHYTSYSSALPSDTPSLAAKQLMTNPAAAGDCDSGGGGSEGLRYQVSETANMEVGTCEPTGHQEIGTTREDQGFNEWGVLDRLVVTSHHHHIGNEESSKGVRFEDADNPQSVHQINHQQQLSLRGEVDFWGYGKQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2361 383 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Acco01g2361 383 MobiDBLite consensus disorder prediction 168 187 - -
Acco01g2361 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 213 - -
Acco01g2361 383 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Acco01g2361 383 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Acco01g2361 383 FunFam NAC domain-containing protein 17 163 - -
Acco01g2361 383 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2361 Acco-ChrAcco01 39946451 39950645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2361 1 379 NAC Transcription Factor Family AT1G33280 51.579 5.47e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco01g2361 NAM 5.2e-37 No_clan