Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2354 ATGGCGTACGCGATGAAGGGTTTGGAGGAATCCCAAGAGCAGATACATAAAATTAGGATTATGTTGTCGGCGTACGCGATGAAGGGTTTGGAGGAATCCCAAGAGCAGATACATAAAATTAGGATTATGTTGTCGGCGTACGCGATGAAGGGTTTGGAGGAATCCCAAGAGCAGATACATAAAATTAGGATTATGTTGTCCTCTAAGCACTGCTCTTCAGCTTATATAAGGAGAAGGTGTGTGACAATGGCGTACGCGATGAAGCCTCCTGCTAAACCTGGTTTGGAGGAATCCCAAGAGCAGATACATAAAATCAGGATTACGCTGTCCTCTAAGCACGTGAAGAATCTTGAGAAAGTTTGTGCGGACTTAGTTCGTGGTGCCAAGGACAAGAGGCTTAGGGTCAAGGGACCTGTAAGGATGCCCACTAAAGTTCTCAACATTACCACTAGGAAATCTCCTTGTGGTGAAGGTACCAATACCTGGGATAGGTTTGAGCTCAGGGTTCACAAGAGAGTGATTGACCTCTACAGCTCTCCTGATGTGGTCAAGCAGATCACCTCCATCACAATTGAGCCCGGCGTTGAGGTTGAGGTCACAATTGCTGACGCCTGA 615 0.4667 MAYAMKGLEESQEQIHKIRIMLSAYAMKGLEESQEQIHKIRIMLSAYAMKGLEESQEQIHKIRIMLSSKHCSSAYIRRRCVTMAYAMKPPAKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2354 204 PRINTS Ribosomal protein S10 family signature 139 154 IPR001848 GO:0003735|GO:0005840|GO:0006412
Acco01g2354 204 PRINTS Ribosomal protein S10 family signature 161 175 IPR001848 GO:0003735|GO:0005840|GO:0006412
Acco01g2354 204 PRINTS Ribosomal protein S10 family signature 104 117 IPR001848 GO:0003735|GO:0005840|GO:0006412
Acco01g2354 204 Pfam Ribosomal protein S10p/S20e 106 200 IPR027486 -
Acco01g2354 204 SUPERFAMILY Ribosomal protein S10 104 201 IPR036838 -
Acco01g2354 204 FunFam 40S ribosomal protein S20 88 203 - -
Acco01g2354 204 Gene3D Ribosomal protein S10 domain 90 203 IPR036838 -
Acco01g2354 204 NCBIfam 30S ribosomal protein S10 103 201 IPR005729 GO:0003735|GO:0006412|GO:0015935
Acco01g2354 204 SMART Ribosomal_S10_2 106 200 IPR027486 -
Acco01g2354 204 ProSitePatterns Ribosomal protein S10 signature. 128 143 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Acco01g2354 204 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 92 203 IPR001848 GO:0003735|GO:0005840|GO:0006412
Acco01g2354 204 Hamap 30S ribosomal protein S10 [rpsJ]. 102 201 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2354 Acco-ChrAcco01 39872825 39877015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2354 83 204 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 87.903 7.78e-76 222