LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g2304	ATGGACATGCCTTCTTCTTCAAGAAGCTCTGCTACGAGCTCCCATGGCCCTTCATCTTCTCCTTACAGAGGAGTTCGCAAGAGGAAGTGGGGCAAATGGGTGTCCGAAATCCGTGAACCAGGCACCAAGACCAGAATTTGGCTTGGCAGCTTTGAGACGCCGGAGATGGCGGCCACAGCCTATGATGTTGCCGCCCTTCACTTCCGAGGTCGTGACGCCAAGCTCAATTTCCCGGAACTCGCCACTAGCCTTCCCCGTCCGGCCACCAACAATGCCGACGACATTCGCATGGCCGCTCATGAGGCTGCCTTGAGGCTGAGGGTCAATAATAATCCAGCAGCTGCCGTGGACCCATCCGCGGGCACCGTGGATATCGATGCTGGGGTCTCGCCAGCCACCGTGAGGCTGTCGTCAACACAGATTCAAGCGATCAATGAGTCGCCGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGGAGACACTGATGTTGGATGAACAATATCCGGGGATGTTTGAAGAGAATAATAATGATGAGACGTGGCAGAATATTCAGAGTGATTCTCTTTGGGATCCTTAA	579	0.5406	MDMPSSSRSSATSSHGPSSSPYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAATAYDVAALHFRGRDAKLNFPELATSLPRPATNNADDIRMAAHEAALRLRVNNNPAAAVDPSAGTVDIDAGVSPATVRLSSTQIQAINESPLDSPKMWMQMSETLMLDEQYPGMFEENNNDETWQNIQSDSLWDP	192

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g2304	192	CDD	AP2	22	80	IPR001471	GO:0003700\|GO:0006355
	Acco01g2304	192	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	7	157	-	-
	Acco01g2304	192	MobiDBLite	consensus disorder prediction	1	20	-	-
	Acco01g2304	192	MobiDBLite	consensus disorder prediction	173	192	-	-
	Acco01g2304	192	FunFam	Ethylene-responsive transcription factor 2	20	79	-	-
	Acco01g2304	192	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355
	Acco01g2304	192	PRINTS	Ethylene responsive element binding protein signature	44	60	IPR001471	GO:0003700\|GO:0006355
	Acco01g2304	192	MobiDBLite	consensus disorder prediction	1	28	-	-
	Acco01g2304	192	Gene3D	AP2/ERF domain	21	79	IPR036955	GO:0003700\|GO:0006355
	Acco01g2304	192	ProSiteProfiles	AP2/ERF domain profile.	21	78	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g2304	Acco-ChrAcco01	39093745	39094323	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g2304	20	192	AP2-EREBP Transcription Factor Family	AT1G71450	60.571	1.54e-64	195

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco01g2304		AP2	8.2e-13	CL0081

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