Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2273 ATGACCACCGGCTATCTTATTTTTGTTATGGAAACTAGATTTAATTTCAAAGCCAAAAAGCTCCAGCGTTGTCCTTCACATAATCACAACACTCTACAGATATTGAAGATGGAGACTGATAATGAAAGTGGGTTGAAGAAGGGGCCATGGACAGCTGAAGAGGACAGAATACTTGTGGATTATATAGAGAAGAATGGGCATGGAAGCTGGAGAGCGCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAAAGTTGCAGACTCAGATGGACTAACTACCTAAGGCCTGACATCAAAAGAGGAAATTTCTCTGACCAAGAACAGCAACTCATCATCAATTTGCATGCTGTCCTTGGCAACAAGTGGTCGACGATAGCGGCTCATCTACCAGGGAGAACTGACAATGAAATAAAAAACTTTTGGAATACTCATTTGAAGAAGAAGCTCTTGCAAATGGGATTAGACCCTGTCACTCATCGTCCAAGATCTCATCAACTTAATATTCTCTCCAATCTCCAACACTTACTATCTTCTCTCTCACCAAATAATAACCCTAATTATAATCATCATCATTTGGACAACATTCTTAATGCCATTCAAACTTTGTCCCCTTCACAACTAGCTAAGCTCCAGGTGCTCCACAACTTAATTCAAGTCCTCGTAACTCCTACTGCTACTGCTGCTACTACTACTACAAACCTGTCTCCGTTTAATCTGGGGCCACTTGTAGATCCCGGCTCGATGATGGATCAACTTCTCTTACAAGAACATCAAAACATTGGAAATTTTCATTCTCTTTCAAATTTGTCAAATGTTGAGGGTCTTCTTCATCATCATCAGCAGCAGCATCTACCAGTGAGTGATGGTCATGAGCTTCTAAAGGTAATGCCATGTTTGGCTGACCCGGTGTCATCGGCTTCGAGTTCGCTTCCCAATCTGGTTTCACCCACACCTGATTGCTCCCCATCACCATCTTCTTTTAACAGAATGAAAGACAAGGCAATAAACCAAAATAATGGCACTCCTAATCCTTCTACTTCAACAAGTACCTTTGATAATTTGGGAGATTTTATGGATGAACAAGCAAGTGAAGCTTTCTGGAAACATCTTATTGACCAAGAAACTAACCAGCCGTGGTCAATCTCATGA 1149 0.4125 MTTGYLIFVMETRFNFKAKKLQRCPSHNHNTLQILKMETDNESGLKKGPWTAEEDRILVDYIEKNGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGNFSDQEQQLIINLHAVLGNKWSTIAAHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSHQLNILSNLQHLLSSLSPNNNPNYNHHHLDNILNAIQTLSPSQLAKLQVLHNLIQVLVTPTATAATTTTNLSPFNLGPLVDPGSMMDQLLLQEHQNIGNFHSLSNLSNVEGLLHHHQQQHLPVSDGHELLKVMPCLADPVSSASSSLPNLVSPTPDCSPSPSSFNRMKDKAINQNNGTPNPSTSTSTFDNLGDFMDEQASEAFWKHLIDQETNQPWSIS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2273 382 SUPERFAMILY Homeodomain-like 44 141 IPR009057 -
Acco01g2273 382 Gene3D - 46 99 - -
Acco01g2273 382 CDD SANT 102 145 IPR001005 -
Acco01g2273 382 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Acco01g2273 382 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Acco01g2273 382 FunFam Transcription factor MYB39 102 163 - -
Acco01g2273 382 Gene3D - 102 149 - -
Acco01g2273 382 FunFam MYB-related transcription factor 46 99 - -
Acco01g2273 382 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Acco01g2273 382 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Acco01g2273 382 SMART sant 99 147 IPR001005 -
Acco01g2273 382 SMART sant 46 96 IPR001005 -
Acco01g2273 382 CDD SANT 49 94 IPR001005 -
Acco01g2273 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Acco01g2273 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 41 255 - -
Acco01g2273 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Acco01g2273 382 MobiDBLite consensus disorder prediction 306 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2273 Acco-ChrAcco01 38756303 38760668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2273 41 372 MYB Transcription Factor Family AT5G16770 47.493 2.07e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco01g2273 Myb_DNA-binding 9e-15 CL0123