Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2232 ATGCTTCATCAGCCCCATACTTACCTCGCTCCTCGTGAAGTACTCTTATCTCTGCCTCAACCATCACTTGCCTCTTCGCTATTTTCCGACCCTTCTGCTGTCACTGGCAGCTCGACAGATTCTCCGGACATGCCCTCAAATTGTCAGAATTTTATCGTTTATCAGGCTGTCGAAACTTCTCAAGGGACTTCCGACGTGCCCACAACCTTTTGGAATCCGTGGGGGAACGGTTCTGTGCCTCAAATTTACCGAACGGAAATAAAAAACCCAGTACGATGTGAGGTTTGCAAAATTGATTTTAATGGCAAGAGTGTGTTTGAGGACCACATATCAGGGAAGAAGCACAAGAAGAAAATGCAATTGCACAATAATCCTAGCAACACGATATTATCTGGAACCTCTAACGTGAAGAATGTTCTAGTCCAAGACAATAGTGTCCAAGGACAAGAGCCATTTGTTGATGCAGGCAAGGACTTAAAGTCTAAGAAACGGAAGCTTTTGAGTGGGGGTGAAGCAGAGCATGATGATCACGTTGACTTGACATCTAATAATGATGGGGTTGGTTCAAAGAAGGTCAAGGTTACTCAATGTACACGATGTGAAATTTGCATGATCAATTGTAATACTAAGGATAATTATATCACACACTTGTCTGGGAAGAAACACCTGAGAAACCTGAAAAAACTATCTAAATTAGAAAGTGATGGCGCTGGTGCTGGTGTTGGTGCTGAAGTCAGTGTAGCTGGTATCACTGCAGCCATTGTAACAGAAAATGATAAGCGACCGGCATTGAATCCAGCAGCTATTGGGACACTAGAAAATCCAGGCACCAATGAACAAGACTGTGTCAATTTATGTCAACCAGAAAATGCAGTCATATTTGAAGCTCAAGAAAAGGACACTGAAACAAAGAAACAGTCTAAATCAAAAGGTGATGGTGCTGGCGCCGGTGCTGGTGCCGATGTCAGCGTACCTGGCATGACTGCAGCCATTTTAGTGGAAAATGATGAGCGACCAGCTACAAATCCAGCTATTGAGTCACAAGAAAAGCCTGGCACTAATAAACAAGAATGTGTTAATTCATGTCAACCAGAAAATTCAGTCATATTAGAAGCTCCAGAAAAGGAAACTGAATCAAAGAAACGGAAGCATGAGCTTGATGGTGGGACTTCTATAACCTCTGCCAAGTTTTGCACTCTATCTAATTTCAACAATGAGACAGTCTTTAATTTGCCTGATTGCCCTGCTCGGTGTGAAATCTGCATGATCGATTGTGATAGCAAGCCTGTTTATATCAAACATATATCAGGGAAGAGACACAAGAGGAACCTGGAGAAAGTATCAAAATCAAAAACCAATGGAGCTGGTGCTAGCGTAGCTGATGATGTTGCAGCAATTATGACTGCAATTGATATGCAACAAGCAACAGATCAAGCAATTGAGCCACAAGAAAAGCTGGAGACTAGTCCACAAGAAGGGTTGCATGCACTTGAATCAGGTAGTGTAGTCATGTTGGAGGCTCCGGAAGAGGACACTGAAACAAAGAAACAGAAGCATGAACTTGAAGGTGGGACTTCTGTAGCCTCTACCAATTCTGGCACTCTATCTAATGCCAACAATGAGACGGGAAGAGACACGAGGAACCTGGAGAAAGTAGCGAAATCAAAAAATGATGGGGCTGGTGCTAGTGTAACCGATGCTGTCTCAGCCATTATGCCTCCAATTGATGCGCAACAAGCAACGACTCAAGCAATTGAGCCACAAGAAAAGCTGGAGACTAGTCCACCAGAAGGGGTGGATGCACTTAAATCAGGAAGTGTAGTCATGGTGGAGGCTTCAGAAAAGGATATGGAAACAGAGAGACGTAAAATTGAACCTTTTGATGGGGCTGCAACTACTTTCAGAGTGTGCAAACTATGCAATGCGCCATGCAACAGTGAGGTAGCCTTTAATTCTCACCTCCGTGGGAAGAAACATGCTGCAATGGTGAAGAAGCTGGCAAATTCAAAAAGTAGTTAG 2019 0.4344 MLHQPHTYLAPREVLLSLPQPSLASSLFSDPSAVTGSSTDSPDMPSNCQNFIVYQAVETSQGTSDVPTTFWNPWGNGSVPQIYRTEIKNPVRCEVCKIDFNGKSVFEDHISGKKHKKKMQLHNNPSNTILSGTSNVKNVLVQDNSVQGQEPFVDAGKDLKSKKRKLLSGGEAEHDDHVDLTSNNDGVGSKKVKVTQCTRCEICMINCNTKDNYITHLSGKKHLRNLKKLSKLESDGAGAGVGAEVSVAGITAAIVTENDKRPALNPAAIGTLENPGTNEQDCVNLCQPENAVIFEAQEKDTETKKQSKSKGDGAGAGAGADVSVPGMTAAILVENDERPATNPAIESQEKPGTNKQECVNSCQPENSVILEAPEKETESKKRKHELDGGTSITSAKFCTLSNFNNETVFNLPDCPARCEICMIDCDSKPVYIKHISGKRHKRNLEKVSKSKTNGAGASVADDVAAIMTAIDMQQATDQAIEPQEKLETSPQEGLHALESGSVVMLEAPEEDTETKKQKHELEGGTSVASTNSGTLSNANNETGRDTRNLEKVAKSKNDGAGASVTDAVSAIMPPIDAQQATTQAIEPQEKLETSPPEGVDALKSGSVVMVEASEKDMETERRKIEPFDGAATTFRVCKLCNAPCNSEVAFNSHLRGKKHAAMVKKLANSKSS 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2232 672 Gene3D Classic Zinc Finger 373 447 - -
Acco01g2232 672 Gene3D Classic Zinc Finger 80 124 - -
Acco01g2232 672 MobiDBLite consensus disorder prediction 508 522 - -
Acco01g2232 672 MobiDBLite consensus disorder prediction 166 185 - -
Acco01g2232 672 Pfam Zinc-finger of C2H2 type 418 440 - -
Acco01g2232 672 Pfam Zinc-finger of C2H2 type 92 115 - -
Acco01g2232 672 Pfam Zinc-finger of C2H2 type 637 659 - -
Acco01g2232 672 Pfam Zinc-finger of C2H2 type 199 222 - -
Acco01g2232 672 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
Acco01g2232 672 SMART ZnF_U1_5 413 447 IPR003604 GO:0003676|GO:0008270
Acco01g2232 672 SMART ZnF_U1_5 88 122 IPR003604 GO:0003676|GO:0008270
Acco01g2232 672 SMART ZnF_U1_5 632 666 IPR003604 GO:0003676|GO:0008270
Acco01g2232 672 MobiDBLite consensus disorder prediction 507 562 - -
Acco01g2232 672 PANTHER ZINC FINGER PROTEIN 385B-LIKE 417 669 - -
Acco01g2232 672 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Acco01g2232 672 SMART c2h2final6 416 440 IPR013087 -
Acco01g2232 672 SMART c2h2final6 198 222 IPR013087 -
Acco01g2232 672 SMART c2h2final6 91 115 IPR013087 -
Acco01g2232 672 SMART c2h2final6 635 659 IPR013087 -
Acco01g2232 672 MobiDBLite consensus disorder prediction 297 321 - -
Acco01g2232 672 SUPERFAMILY beta-beta-alpha zinc fingers 187 229 IPR036236 -
Acco01g2232 672 MobiDBLite consensus disorder prediction 336 359 - -
Acco01g2232 672 SUPERFAMILY beta-beta-alpha zinc fingers 406 447 IPR036236 -
Acco01g2232 672 MobiDBLite consensus disorder prediction 166 181 - -
Acco01g2232 672 Gene3D Classic Zinc Finger 187 238 - -
Acco01g2232 672 Gene3D Classic Zinc Finger 629 670 - -
Acco01g2232 672 MobiDBLite consensus disorder prediction 523 543 - -
Acco01g2232 672 SUPERFAMILY beta-beta-alpha zinc fingers 87 122 IPR036236 -
Acco01g2232 672 MobiDBLite consensus disorder prediction 579 599 - -
Acco01g2232 672 SUPERFAMILY beta-beta-alpha zinc fingers 628 666 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2232 Acco-ChrAcco01 38242082 38245618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2232 611 663 C2H2 Transcription Factor Family AT5G61190 47.170 2.67e-06 48.9