Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2216 ATGGAATATGGTGCGGCCTTAGTACACAGCAATTCAGCATTTGAGACCATATCAGACGGTACTACTACTGCCCCAGTTTCAGAAGTAGAAGGGGATTTCATTGACGAGCTCTTCGCACATGGTTGTTGGCTGGAAACCACTACTGGAGGACCATACAACATCACAAATCCCCCTTCTCTCATCAACAGTGACCCTAATTTCCACAATTATTGGTCACCCTCCTCGTCAGACCCAAATCAACACCATCACCACCAAATCTATCACCAACAAGATCAATCATCAGAGGTGAGTAGTAATAATTTCCCCTTCTTATTCCAATCCGAAAGCTTTGTGGTTGCAAGCACCGAAGTCGGCAAAAGATGGTGGATCGGACCAAAGGCAAATCCTGGACCATCTTCCTCAGTCAAAGAAAGATTAGTCCTTGCCGTGGGTTACCTAAGAGAATACACCAAAAATACCAACATATTTCTACAGATATGGGTACCCACTAGGAGATCATCCCTAGTTGATGATCCAAACGGTAATAAGAATCTTGAATGTTACCGAAATGTTTCCAAGGGTTTTTATCATCATCATCATCAGTTCGCTGCTGCCGAGGAGGAATCTTCTGCAGAAGAGTTTCGAGTAGTCCTAGGAAAGTTGCCGGATCATCATCATTATCAGTGGAATACCCCCACTAGTGTTCGGTTTTTCAAAAGTCATGAGTATGTTTCTTATGTAAATTATGCACCACTGCACTATGATTTGCGTGGATCTTTGGCCCTTCCCGTGTTTGAGCGAGGCAGTGGGACTTGCCTTGGCGTTGTTGAGATTTTAATGACCAGTCACAACATCGATTATCACCCACAGATTGACAATGTCTGCCATTCTCTACAGACTGTTGATTTTAACAAGAACACTTGCCAGAACCTTATTTCTCCGGCTGTGAAGGTATTTGACGAGTTGTACCTAGCTGCACTAAATGAAATAGTGGAGGTATTAACATCTGTGTGCAAGACACATAATTTGCCTTTAGCTCTCACTTGGTCGCCCTGTGCCCAACAAGGCAAGGCTGGATTATGTCCCAACGACAACTTCGTAGGTTGTTTGTCCACCGTAGATTCCGCCTGCTACGTGGCTGATTTAGAGTTGCTGGGGTTCCAAGAAGTCTGCTCTGAGTACCACCTCCTTAGAGGCCAAGGCATTGTTGGCACCGCCTTCACCACCACCAAGCCATGCTTCGCCACCGACATAACCGCCTTCAGCAAAACCGAGTACCCTCTCTCTCACCACGCCGCTATGTTTGGTTTGCGCGCCGCTGTCGCTATCCCCCTCCGCAGTGTCTACACCGGAGCCGCCGCTGATTTCGTGCTGGAGTTTTTCTTACCCAAGAATTGCCATGACGGCGAAGAACAAAAGCAGTTGCTGAATTTGTTGTGCATTGTTGTGCAACAAGCTTGCCGGAGTTTCCATGTTGCCATGGACAACAAACAGATGGGGGAGGAAGAAGAAGATTTCACGTTTACAGTTGGAGATATGTTGGCTGCTGCGGCGGCGGTTTCATCTTCAAAAGGTGGGGGTGGTGGGGCCCATCACAAAGAAGAAACTCTAGAGTTTGGTGGGTCTAATTGTGATAATTTAGATGAAGCAGCGTCATGTTCAAAAGAATCGTCGTGGATTGCTCATATGATGGAGGCTCAAACACAACACAAGGGTAAAGGCGTGTCGGTCGTGTCGTTGGAATACTTAGAAGAACCAAAACAAGAGTTTAAAGTGACAACCAACTGGCGATTCTGCAGTAATAATAATGATAATGGCCAGACATTTTCAGATTATGGACAAGTTCATCATGCGAATTCAGCAGCAGCAGCGTCCAGAGCGATGAGTGTAGAGGGCGGAGGAGAATCTTATGCTTTTGGCGGTGGTGGCGGACGGCGATCATCTTCCGGAGGCAGAAAATCAGGCGAGAAGAGACGAACCAAGGCCGAGAAGACAATCAGCTTGCCGGTTCTCCGGCAATACTTTGCAGGAAGCCTTAAAGATGCTGCCAAGAGCATCGGCGTGTGTCCGACGACTCTGAAAAGGATATGCAGACAACATGGGATTACAAGGTGGCCTTCGAGGAAAATAAAGAAGGTAGGACACTCGTTAAGGAAACTTCAGCTTGTGATCGATTCAGTACAAGGTGCTGACGGAGCCATTCAGATCGGTTCTTTCTACTCCAGTTTCCCAGAATTGAGCTCCACAAATTTGTCTTCTGCCACTGATCCTTCTCAATCATCAAACACCAGCGACCATTCTAAGAACCTTCATAATAATAATCCTCATCGTCCGGAGCACGGCTTATATAGCCACCACCACAGCGGCGGCGCGACAACATTAAAATCTCCGCCCTCTTGTTGCAGCCAAACTTCCACCATCATCAACGCCGCCAACGCCACGTCTAGTGGTGGTGGTGGGGATGTTTTAATGGCAGAAAACCCAGAAGCGTCGCTCCAGCTGAGAGCTCTTGAGCAGAAGCTATCATCACTTGGTGAGCATCCTAGTACTGTTGAGGTCTTACCTCCGCTGCCGTTGCCGGAAAACAGTGGTGGGTGGAACAATGCACGAGACGGTGGTGCTTTTAGGGTGAAAGCTACATTTGGGGATGAGAAGATTCGTTTTAGCTTGCAACCTAATTGGGGGTTTAGAGAACTAAAAATGGAGATAGCAAGAAGATTCAATGTAGATGATTTGAGTAACATTGGTGTGAAGTATTTAGATGAGGAAGGTGAGTGGGTTCTTTTAACATGTGATGCTGATCTTGAGGAATCTAAAGACACATATCGATCATCAAAGATCCGTACAATGAGGTTCGCTTTGTTTCAAGCTTCGCCTCTAAATCTAGCCACCAACACTTTTGGCAGCAACAGCTCGTCATGA 2901 0.4671 MEYGAALVHSNSAFETISDGTTTAPVSEVEGDFIDELFAHGCWLETTTGGPYNITNPPSLINSDPNFHNYWSPSSSDPNQHHHHQIYHQQDQSSEVSSNNFPFLFQSESFVVASTEVGKRWWIGPKANPGPSSSVKERLVLAVGYLREYTKNTNIFLQIWVPTRRSSLVDDPNGNKNLECYRNVSKGFYHHHHQFAAAEEESSAEEFRVVLGKLPDHHHYQWNTPTSVRFFKSHEYVSYVNYAPLHYDLRGSLALPVFERGSGTCLGVVEILMTSHNIDYHPQIDNVCHSLQTVDFNKNTCQNLISPAVKVFDELYLAALNEIVEVLTSVCKTHNLPLALTWSPCAQQGKAGLCPNDNFVGCLSTVDSACYVADLELLGFQEVCSEYHLLRGQGIVGTAFTTTKPCFATDITAFSKTEYPLSHHAAMFGLRAAVAIPLRSVYTGAAADFVLEFFLPKNCHDGEEQKQLLNLLCIVVQQACRSFHVAMDNKQMGEEEEDFTFTVGDMLAAAAAVSSSKGGGGGAHHKEETLEFGGSNCDNLDEAASCSKESSWIAHMMEAQTQHKGKGVSVVSLEYLEEPKQEFKVTTNWRFCSNNNDNGQTFSDYGQVHHANSAAAASRAMSVEGGGESYAFGGGGGRRSSSGGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGADGAIQIGSFYSSFPELSSTNLSSATDPSQSSNTSDHSKNLHNNNPHRPEHGLYSHHHSGGATTLKSPPSCCSQTSTIINAANATSSGGGGDVLMAENPEASLQLRALEQKLSSLGEHPSTVEVLPPLPLPENSGGWNNARDGGAFRVKATFGDEKIRFSLQPNWGFRELKMEIARRFNVDDLSNIGVKYLDEEGEWVLLTCDADLEESKDTYRSSKIRTMRFALFQASPLNLATNTFGSNSSS 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2216 966 ProSiteProfiles PB1 domain profile. 867 945 IPR000270 GO:0005515
Acco01g2216 966 MobiDBLite consensus disorder prediction 71 91 - -
Acco01g2216 966 MobiDBLite consensus disorder prediction 629 656 - -
Acco01g2216 966 MobiDBLite consensus disorder prediction 743 792 - -
Acco01g2216 966 ProSiteProfiles RWP-RK domain profile. 645 726 IPR003035 -
Acco01g2216 966 SMART PB1_new 867 950 IPR000270 GO:0005515
Acco01g2216 966 MobiDBLite consensus disorder prediction 743 762 - -
Acco01g2216 966 PANTHER PROTEIN NLP8 73 958 IPR045012 GO:0003700
Acco01g2216 966 MobiDBLite consensus disorder prediction 763 777 - -
Acco01g2216 966 Pfam RWP-RK domain 659 706 IPR003035 -
Acco01g2216 966 Gene3D - 866 952 - -
Acco01g2216 966 CDD PB1_NLP 868 949 IPR034891 -
Acco01g2216 966 Pfam PB1 domain 868 949 IPR000270 GO:0005515
Acco01g2216 966 SUPERFAMILY CAD & PB1 domains 864 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2216 Acco-ChrAcco01 38034958 38039020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2216 11 962 NLP Transcription Factor Family AT4G35270 41.782 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Acco01g2216 PB1 1.4e-16 CL0072