Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2215 ATGTCTCTCTCCGACGCTGGTGCAGTTCCTGCTCCGTCGTTGTCCACAACTCCAAGCAGCAGCCCCGGCCAGAAGCAGCATTGTCGTAGCAAACGGAAGAAAAGACTCGGCGTCGTCATCGACCACAAGGTGTCTTTCAAGCCCAAGCACTCAAAACAACCGCACCACCATCCTGACGCGGCGGCGTCGCCGATGATCCCTCGGCCATGCACCGAGTGCGGGAAGAGGTTCTGGTCATGGAAGGCTCTGTTCGGCCACATGCGCTGTCATCCCGAACGCCAGTGGCGCGGAATCAACCCGCCCCCAAATCTCCAACGACAACCAGCACCACCACCGGATAACCAAACGCCGGCGGAATTATTGATGACCGCGGAAGACCACGAGATCGCGGCGGGTCTTTTGCTGCTGGCGAACTCGGAGGGGCCGGCGGCTGGCGGAGGACCGTCAACGACGGCGCGGTTCGAGTGCTCGAGTTGCAAGAAGGTGTTCAGTTCACGGCAGGCTCTGGGAGGGCACAGGGCAAGCCACAAAAACGTGAAGGGGTGCTTCGCGAACGAAGAAGACGAGGAGATGACGTCAGCGGCTATGATGGTTCTAGAAGGGCACAAGTGTGGGATATGCCTGAGGGTGTTTTCGAGTGGCCAAGCGCTGGGTGGTCACATGAGGTGTCACTGGGACAAAGGTGACCCTGAACCCAACCCCTTTCATCATCATCATCAAGGATTTGGGCTTGACTTGAATTTGCCTCCACCTCCGCTTCCACATGATTCATCTTCCTCCTCTCCTTTCACTCTGGATTTGAGATTGGGACTTTAG 816 0.576 MSLSDAGAVPAPSLSTTPSSSPGQKQHCRSKRKKRLGVVIDHKVSFKPKHSKQPHHHPDAAASPMIPRPCTECGKRFWSWKALFGHMRCHPERQWRGINPPPNLQRQPAPPPDNQTPAELLMTAEDHEIAAGLLLLANSEGPAAGGGPSTTARFECSSCKKVFSSRQALGGHRASHKNVKGCFANEEDEEMTSAAMMVLEGHKCGICLRVFSSGQALGGHMRCHWDKGDPEPNPFHHHHQGFGLDLNLPPPPLPHDSSSSSPFTLDLRLGL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2215 271 SMART c2h2final6 154 176 IPR013087 -
Acco01g2215 271 SMART c2h2final6 202 224 IPR013087 -
Acco01g2215 271 SMART c2h2final6 68 90 IPR013087 -
Acco01g2215 271 MobiDBLite consensus disorder prediction 232 264 - -
Acco01g2215 271 SUPERFAMILY beta-beta-alpha zinc fingers 202 227 IPR036236 -
Acco01g2215 271 MobiDBLite consensus disorder prediction 9 25 - -
Acco01g2215 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Acco01g2215 271 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 39 271 - -
Acco01g2215 271 MobiDBLite consensus disorder prediction 1 66 - -
Acco01g2215 271 Gene3D Classic Zinc Finger 151 224 - -
Acco01g2215 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Acco01g2215 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 224 IPR013087 -
Acco01g2215 271 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Acco01g2215 271 SUPERFAMILY beta-beta-alpha zinc fingers 68 176 IPR036236 -
Acco01g2215 271 MobiDBLite consensus disorder prediction 95 114 - -
Acco01g2215 271 Pfam C2H2-type zinc finger 69 92 - -
Acco01g2215 271 Pfam C2H2-type zinc finger 153 177 - -
Acco01g2215 271 Pfam C2H2-type zinc finger 202 227 - -
Acco01g2215 271 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Acco01g2215 271 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2215 Acco-ChrAcco01 38011315 38012130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2215 58 271 C2H2 Transcription Factor Family AT4G35280 55.365 5.83e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g2215 zf-C2H2_6 4.6e-11 CL0361