Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2168 ATGAACATCATCACGCAAAGCCTGTCCGAGAGACTGAGGCCCCTTGTGGGGTTGAATGGCTGGGACTACTGTGTTCACTGGGAACTAAGCCAGGACCAAAGGTTTCTTGAATGGCTGGGATGCTCTTGTGCTGGGACTGAAGGTAGCCAAAATGGTGGAGAAGAACTTCTTTTCCCTGTTTCTTCAGCTGCTCCATGCAGAGATACAATGTTTCCTCATCCCAGGACAAAGTCCTGTGATTTACTATCCCAACTCCCCACTTCGATAACCTTAGATTCTGGGATTCATGCAGAGACACTATTATCCAATCAGCCCAGTTGGTTGAACTATTCCAATAGCTTAGACCCAAACACTTTGGAAGAAACAACTGGGACCCAGGTTTTGATTCCTGTGCTTGGGGGACTAATCGAGCTGTTTGTGACAAAGCAAGTGCAGGAAGATCAACAGGTGGTCGATTTCGTCACAGCCCACAGCAATATGGATATGAGCTTCGACATTGACGTTAATTCAATCAGTCATATGCAAACAAATATGAATCCACTATTAGGCGATGAGAATGAAGGGAATACAATAGCATCAGAGACTTCAAGTCTTCCCCCACATGATCAATGCAATTCACCACTGAACTTGATGCAGCAATATAGCTACAACAGCAACCCAAATAACGGAATGAAAAGTGACGGTATTTTTGAAGATTCCCAAGGTTCATTCCTATTGAACAAAAGCCAGCAATTTGGGGAGCCAATGGAGAAGAAGGATCAGCAAGGGGGCGATAAGGATTTGATCAAACACTTGGTGGGCAGGTCAGATTCGATGTCGGATTGCAGCGATCAAAACGAAGACGATGATGATGGTAAGTATAGGCGAAGGAATGGGAAAGGGAATCAATCAAAGAATCTTCTGGCAGAGAGAAGGAGGAGGAAGAAGCTGAACGATAGCTTGTATAATCTTCGGTCTTTGGTTCCCAGAATTTCCAAGCTGGACAGAGCATCGATTCTTGGGGACGCAATTGAGTACGTGAAGGATTTGCAGAAGCAAGTTAAAGAGCTACAAGATGAGCTCGAGGAACATTCTGAAATGGATGAACAACAAGCACTACCAGATAATGTTGTTGGGGTTGAAATGGGACCAGAAGCCGATCAAATGAAAACCCAAAATGGGTTTCATGTGGGGAAATCAGGGAACGACTATATGTGGAAGCAAAAACAAGAGTTTGACGCTCCAAACGACAAACAAACACAACATATGGAGCCACAAGTAGAAGTGGCAGTGATAGAAGCGAATGAGATGTATGTTAAGGTGTTCTGTGAGCACAGACCTGGTGGGTTCGTGAAACTGATGGAAGCATTCTATGATCTGGGCTTCGAAGTCATCCATGCAACCGTCACCAGCCACAAGGGCCTCGTCTCCAATGTTTTCAAAGTAGAGAAGAAGGAGGATGAAATGGTAAAAGCTGAAGAGGCGAGGGAATCCCTGATGGAACTTATGAGGAATCCATGTACAGGGTGGAATCATCATGAGATGAGCACAAGTGTGGCATCAGAGAATAGAGTGGCAATAAGGGACTATCATCATCAGCAAGAGCAACAACAACAGCTTCATAATCTTCACAACCACCACATGCCTGCTGCTTATAACCCCCACCATTTACACCACACTCATACTAATTAG 1671 0.4476 MNIITQSLSERLRPLVGLNGWDYCVHWELSQDQRFLEWLGCSCAGTEGSQNGGEELLFPVSSAAPCRDTMFPHPRTKSCDLLSQLPTSITLDSGIHAETLLSNQPSWLNYSNSLDPNTLEETTGTQVLIPVLGGLIELFVTKQVQEDQQVVDFVTAHSNMDMSFDIDVNSISHMQTNMNPLLGDENEGNTIASETSSLPPHDQCNSPLNLMQQYSYNSNPNNGMKSDGIFEDSQGSFLLNKSQQFGEPMEKKDQQGGDKDLIKHLVGRSDSMSDCSDQNEDDDDGKYRRRNGKGNQSKNLLAERRRRKKLNDSLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEEHSEMDEQQALPDNVVGVEMGPEADQMKTQNGFHVGKSGNDYMWKQKQEFDAPNDKQTQHMEPQVEVAVIEANEMYVKVFCEHRPGGFVKLMEAFYDLGFEVIHATVTSHKGLVSNVFKVEKKEDEMVKAEEARESLMELMRNPCTGWNHHEMSTSVASENRVAIRDYHHQQEQQQQLHNLHNHHMPAAYNPHHLHHTHTN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2168 556 SMART finulus 300 349 IPR011598 GO:0046983
Acco01g2168 556 SUPERFAMILY ACT-like 431 495 IPR045865 -
Acco01g2168 556 ProSiteProfiles ACT domain profile. 431 517 IPR002912 -
Acco01g2168 556 Coils Coil 475 498 - -
Acco01g2168 556 Gene3D - 284 359 IPR036638 GO:0046983
Acco01g2168 556 CDD bHLH_AtAMS_like 297 361 - -
Acco01g2168 556 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Acco01g2168 556 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 142 494 - -
Acco01g2168 556 MobiDBLite consensus disorder prediction 177 231 - -
Acco01g2168 556 Pfam Helix-loop-helix DNA-binding domain 301 344 IPR011598 GO:0046983
Acco01g2168 556 CDD ACT_UUR-ACR-like 432 496 - -
Acco01g2168 556 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 155 IPR025610 -
Acco01g2168 556 MobiDBLite consensus disorder prediction 267 305 - -
Acco01g2168 556 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 296 358 IPR036638 GO:0046983
Acco01g2168 556 Coils Coil 333 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2168 Acco-ChrAcco01 37620115 37622510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2168 6 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.140 2.91e-145 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g2168 bHLH-MYC_N 1.8e-18 CL0161