Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2115 ATGGAAGTAAGCCTCACTTCCAATCACTATACTCTTAGTTTGACCTCACGTTCTCCTTCTGCCTTCTCTCTTGCGAGTCTCCGATCCATCCGTACGCAATTCCTCGGTTGTTCTCATAATCTCAGGCCTCCTGGACGTGTTCGCTCTAGAAATATTAAATGCAAGAAGTTGCAGCTTCTTCAGCTCCATTCTCCTCGTTTTATCTTCAAAGCCTCTTTGAGTTCTCACTCCGTCGTTGTCGTGATCACCTTAGTTACTTTATCTGCCGTTTCTCTGTTCTACTATAATTACATCAAGAGAAAGAAGAACTCCAAAGAGATACTGGAACACCCGAACTTTGCATTATCACAGCAAGGAGGTAATATTGGGAACCAGGCCATCGAAAGTCAGATTCTTTGCTTTCAGGAATTTCAAGGGGAGAACTTGCTAAAGGAAATTGGAATATTGGAGGATAAATCTGACAGAGAAAACCATGATTTTGAGGGCAAAGAGACCCAACTAACATATTGCGCATCTCCTATGGTTCAAGAAGAGGCTGTTGTGACTGAGAAATTAGAGTCACCTTCTGATGTTCTAACCTCTAGCGTTAACACTACTTCATCTTCAAACACTTCCAAGGTTGTAGATGAATCTCATTTGTCCGTGGAATTCCAATCAGGTTCTTTTGAGCCTCTATCTTTTGCTGCAGAGATGACTGAATTACAAGTGGAAGAAACAAGAGATAGAACTCGCTCTGATCCTGAGTTTCCTGTAATCACAAATAAGCATGAGCATACTGCTTCTTTTGATCCTTTAAACAATGAATTCACAATAGTGAAAGATCATGCTAAAGAAAAAATTGAACTTGGTCACATCGATGTTCTAGTTGGTGAATCTGCTAGGCAAGAACTGTACATGTTTTATCAGGTCAACATGTCTTCAACAGGATCCATGTCATCACTGAATGGTTTAAAATCACCACTTTCTCATGCTTTGTCCATGAAGAGAAAAGAATTGAAATCGACAATGGCGAATAGTGCTTTAAAAGGACCAGAATTATTAAAAGAGGTTTCTCTAGATATTTCAGACAATATTGAAGGAGTGGAACCAAGAGCCAGTTGCAAAGAAGGGTATTCCCAGCAGAACGGAAGTCATTCCTTGAGTAAGCGCAACAGATCTCTGAGCAACAGGGGAAAAACTGATTTGGACCAGAAAAGTAGTAACGAACTTCTTCCCCAGAATTCTGACTCAATCAGGGAGTATGTTGATAAGGAAAATGTTCATTCTCAACATCTTAGAACATATAATTCTTTGCTAAATGATGGAAGGTTACATGAATGTGTTGAATTGCTTAAAGATATGGAAATGAAGGGAATTTTAGACATGACTAAGGTTTATCATGCAAAGTTCTTTAACATCTGCAAGAGACAAAAGGCTGTTAGAGAAGCTTTTGATTACATTAAGCTTATTCCAAATCCAACATTGAGCACATTTAATATGCTCATGTCTGTGTGTTCTAGCTCTCAAAATTCGGAAGAGGCTTTCCAAGTGCTGAAGCTTATTCAGGGGGTTGGATTCAAACCTGATTGCAAACTCTATACCACTTTGATATCAACATGTGCCAAGAGTGGTGAAGTTGATCAGATGTTTGAGGTATTTCACAATATGGTTAATTCTGGAATTGAACCTAACGTCCATACCTATGGGGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGGATACTGAGGTCTAAGAAATTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCATGTGCTCGGTCTGGAGCAGTGGAGCGTGCTTTCGATGTTTTAGCTGAAATGGCTGCAGAATTGCAACCTATTGAACCAGATCACATAACTATTGGTGCATTAATGAAGGCATGTGCAAATGCTGGTCAGGTTGAACGAGCTCGAGAAGTGTATAAGTGGTTAGACCAATATGGCATAAAGGGAACTCCAGAGGTCTACACTATTGCCATCAATGCTTGCAGCCAAACTGGAGATTGGGAATTTGCATGTGATGTATACAGTGACATGATTGGGAAAGGGGTTTTCCCAGATGAGATGTTTCTAGGTGCACTAATAGATTTTGCTGGACATGCTGGAAAGCTAGATGCTGCCTTTGAATTCCTACAAGAAGCTCGTAACCAAGGAATAAATATTGGAAAAGTGTCATACGGCTCTTTGATGGGAGCCTGTAGCAATACTGGAAATTGGGAGAAAGCATTAGAGCTATATGAGGATCTTAAGTCCTGTAAAATGGTGCATAGTGTTTCAACAGTGAATGCTTTGATCACTGCTCTGTGTGATGGGGATCAATTTCACAAGGCTATGGAGGTTTTGTTTGAAATGAAAGGATTGGGCCTATGCCCAAACAGTATCACATACTCAATACTCATAGTTGCAAGTGGGAAAAAGGACGATCTGGAAGCTGCTCAAATGCTCCTATCTCAAGCCAAAATGGACGGTGTTCCCCCTAATCTTGTCATGTGTAGATGTATAATCGGGATGTGCTTGAGGAGATATGAGAATGCTTGCAATGTTGGTGAGCTATATTTTGACTCAAGACAGCCGCATGTTAATAATAAATGGACATCACTGGCCTTAATGGTGTATCGAGAGATGATTAGAGATGGTACAGTGCCTACTAGTGAAATTCTGTCACGAATTTTTGGATGCCTGCAACTCCCTTATGATACCTCTTTGAAAAATAATCTTATTGAGAGCCTAGGAGTAAGTGCTGAAACTTCAAAACACTCAAACCTCTGTTCGTTGATTGATGGATTTGGTGAATATGATCCTCGTGCTTTTTCGCTACTTGAGGAAGCTGCTTCTCTTGGAATTGTTCCATTCGTATCTTTTAAAGTGAATCCTATTGTTGTGGATTTAAAGGAATTGCACAATTTTACCGCTGAGGTATACCTCCTAACTGTTTTGAAAGGTCTCAAGCATCGGCTTGCAGCAGGCACTTGGTTACCCAACTTAATCATCTTATTTCCTGTAGAGAAAACAAAAGTTGCAACTTCCAAGGGGGAGAGACTTATTGACGTTTCAGGAAGGGTTGGCCAGGCAGTCACAGCACTGTTGAGAAGGCTGAGAATACCATACCATGGCAGTGAATCATTTGGAAAGATCAGAATTAATGGAGCAACTTTGAGAAGATGGCTTCAGCCAAAACTTGCATCTCCTTTCAGTGAAAAGCCAGGTGACTTTGGCTTGTCACAGTCACGACTTGGCAAAGGTATCCGTCTTCAACGGCGAAACATTCGAACCAGCCATCTGTCCTTGGATTAA 3330 0.4078 MEVSLTSNHYTLSLTSRSPSAFSLASLRSIRTQFLGCSHNLRPPGRVRSRNIKCKKLQLLQLHSPRFIFKASLSSHSVVVVITLVTLSAVSLFYYNYIKRKKNSKEILEHPNFALSQQGGNIGNQAIESQILCFQEFQGENLLKEIGILEDKSDRENHDFEGKETQLTYCASPMVQEEAVVTEKLESPSDVLTSSVNTTSSSNTSKVVDESHLSVEFQSGSFEPLSFAAEMTELQVEETRDRTRSDPEFPVITNKHEHTASFDPLNNEFTIVKDHAKEKIELGHIDVLVGESARQELYMFYQVNMSSTGSMSSLNGLKSPLSHALSMKRKELKSTMANSALKGPELLKEVSLDISDNIEGVEPRASCKEGYSQQNGSHSLSKRNRSLSNRGKTDLDQKSSNELLPQNSDSIREYVDKENVHSQHLRTYNSLLNDGRLHECVELLKDMEMKGILDMTKVYHAKFFNICKRQKAVREAFDYIKLIPNPTLSTFNMLMSVCSSSQNSEEAFQVLKLIQGVGFKPDCKLYTTLISTCAKSGEVDQMFEVFHNMVNSGIEPNVHTYGALIDGCARAGQVAKAFGAYGILRSKKLKPDRVVFNALIAACARSGAVERAFDVLAEMAAELQPIEPDHITIGALMKACANAGQVERAREVYKWLDQYGIKGTPEVYTIAINACSQTGDWEFACDVYSDMIGKGVFPDEMFLGALIDFAGHAGKLDAAFEFLQEARNQGINIGKVSYGSLMGACSNTGNWEKALELYEDLKSCKMVHSVSTVNALITALCDGDQFHKAMEVLFEMKGLGLCPNSITYSILIVASGKKDDLEAAQMLLSQAKMDGVPPNLVMCRCIIGMCLRRYENACNVGELYFDSRQPHVNNKWTSLALMVYREMIRDGTVPTSEILSRIFGCLQLPYDTSLKNNLIESLGVSAETSKHSNLCSLIDGFGEYDPRAFSLLEEAASLGIVPFVSFKVNPIVVDLKELHNFTAEVYLLTVLKGLKHRLAAGTWLPNLIILFPVEKTKVATSKGERLIDVSGRVGQAVTALLRRLRIPYHGSESFGKIRINGATLRRWLQPKLASPFSEKPGDFGLSQSRLGKGIRLQRRNIRTSHLSLD 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2115 1109 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 804 838 IPR002885 -
Acco01g2115 1109 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 734 768 IPR002885 -
Acco01g2115 1109 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Acco01g2115 1109 Gene3D Tetratricopeptide repeat domain 424 626 IPR011990 GO:0005515
Acco01g2115 1109 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 664 698 IPR002885 -
Acco01g2115 1109 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 622 IPR002885 -
Acco01g2115 1109 Pfam Pentacotripeptide-repeat region of PRORP 489 628 IPR033443 -
Acco01g2115 1109 Pfam PPR repeat 667 696 IPR002885 -
Acco01g2115 1109 Pfam PPR repeat 634 654 IPR002885 -
Acco01g2115 1109 Pfam PPR repeat 430 452 IPR002885 -
Acco01g2115 1109 Pfam PPR repeat 736 764 IPR002885 -
Acco01g2115 1109 Pfam PPR repeat family 769 812 IPR002885 -
Acco01g2115 1109 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 622 713 - -
Acco01g2115 1109 Gene3D Tetratricopeptide repeat domain 635 745 IPR011990 GO:0005515
Acco01g2115 1109 Gene3D Tetratricopeptide repeat domain 746 864 IPR011990 GO:0005515
Acco01g2115 1109 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 436 567 - -
Acco01g2115 1109 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Acco01g2115 1109 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Acco01g2115 1109 MobiDBLite consensus disorder prediction 368 386 - -
Acco01g2115 1109 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 769 803 IPR002885 -
Acco01g2115 1109 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Acco01g2115 1109 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 714 861 - -
Acco01g2115 1109 MobiDBLite consensus disorder prediction 365 408 - -
Acco01g2115 1109 NCBIfam pentatricopeptide repeat 490 523 IPR002885 -
Acco01g2115 1109 NCBIfam pentatricopeptide repeat 667 700 IPR002885 -
Acco01g2115 1109 NCBIfam pentatricopeptide repeat 736 767 IPR002885 -
Acco01g2115 1109 NCBIfam pentatricopeptide repeat 525 558 IPR002885 -
Acco01g2115 1109 NCBIfam pentatricopeptide repeat 772 804 IPR002885 -
Acco01g2115 1109 NCBIfam pentatricopeptide repeat 559 592 IPR002885 -
Acco01g2115 1109 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 14 1108 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2115 428 903 Glycosyltransferase AT1G05670 23.944 3.15e-36 145