Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2099 ATGTCTGAGTCACCTCGTCCCGATATGGACGAGTCTGTTACTGTGTCGAAGACCGTACCAGGTTCCGAGGTGTTGGGAGAGGAGAAACCTTCGTCCAACTTGAATGGGTTGACTCAGCAAACGCCCGAGCAACTCGTGGCCAGGGCCATAGCTCCTGTGAAGGTGGAGTTCCTTCGTCCTCCTCCTGTTAGAACTTCCTCCACAACCCTGGCTGAAGATGTTTATGAAGACAAGGATAAGGCCTCTGTTCAATCCGGTGGATTGTTGAAGGAGAAGAAGTCGAAGCGCCAACTCAAGCGTGAACGCCGTCAGGAACAGAAGTCTACTAAAAACATTTGTCCGGAAGTTGCAAAGACGGGAGATATTAGTTCATGTCCTTACAAAGACAAATGCCGCTTCAGCCATGACTTAGAAGCCTTCAAAGCTCAGAAACCAACTGATTTAGAGGGAGAATGCCCTGTTTTTAAAGCTGAAGGTTCATGCCCCTATGGGTTAGCATGTAGGTTTTCCAGCACGCATACAGAAGACATGCCTTCTGGCAATCTCAATGGTCGGAGGAAAACTTCTGAAATAAATGGACTAAGTAAAAATGTGCAAAGGCTTTTATGGAAAAATAAGATGCGCTTCCCCAAGGCAGATGCCAGTCTCAGAGCTCTTGGACTCTGGGAATCATCTAAGTTAAAGCGAAATGACTTAGAAGATAAGGAGGGTAGCAACATTGATTCAAATAATTGCCACAAGGCTGATAATAATGGCTCTTGTGAAGTTACAAATGACTTGGGTTCTAACTTAGAAAGCTCTGCTGAGGACACAAAAGTTGATGGTGATGGAAATTTAGATTCTAATTCACCTTGCACTCAAAAGAGAAGAAAAACTGAAGAAAATTCTGGCCTTAATGCGGCAGAAAAAGAAGGTATGTGTGTTACTGACCAAAACATTGAAAAAAGCTGCATACAAGCTGAACTTGATGTAGTAACTGATGTCATACCCCGTGAAACTGATCAAAGCATGAAGTTACACCCACGAGAAAAGAAGCTTATTGATTTCAGAGATAAGTTGTATCTTGCGCCCTTGACCACTGTTGGGAATCTCCCATTCAGGAGGGTCTGCAAAGTATTAGGAGCTGATGTAACATGCGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCATCAGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGCGTACAAATATGTGGGGCATATCCAGACACTATTGCACGAACTGTAGAATTGATAGAGCAGGAATGTACGATAGATTTTATTGATATAAATATGGGTTGCCCAATAGATATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTCACAAAACCAGTGCGGATGAAAAATGTTGTAGAGGTAGCTTCAGGCACAGTGGAGAAACCTATAACTGTTAAGGTACGGACAGCTTATTTTGAAGGGAAAAATCGTGTCGATTCTATTATTGCAGACATGAGTTCTTGGGGAGCTAATGCAGTAACAATACATGGTAGATCACGTCAACAACGATACAGCAAGCTTGCTGACTGGGACTATGTCTACCAATGTGTCAGGAAGGCCCCTAATACTTTGCAAGTAGTAGGGAATGGAGATATTTTTTCATTTGTTGACTGGAACAACCACAAGGCTGAATGCTCTGAGCTTGCTACATGCATGATTGCTCGTGGAGCTCTGATTAAGCCTTGGATATTTACAGAAATCAAGGAACAAAGGCACTGGGACATTAGTTCTGGGGAGCGATTACATGTTTTGAAAGATTTTGTACATTTTGGCCTTGAACACTGGGGTTCTGATACAAAAGGAGTGGAGACGACCAGGCGGTTCTTATTGGAATGGCTTAGCTACACATGTAGATATATACCCGTTGGCCTTTTAGATGTTATTCCACAAAGACTAAACTGGCGTCTGCCCTCTTACTACGGACGTGATGACCTTGAGAATCTAATGGCTTCAGACTCTGCAGCTGACTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCAGACGGCTTTTCTTTTACGCCGAAGCATAAATCAAATGCTTATGATAGTGCTCAGAATGGCTGA 2115 0.4322 MSESPRPDMDESVTVSKTVPGSEVLGEEKPSSNLNGLTQQTPEQLVARAIAPVKVEFLRPPPVRTSSTTLAEDVYEDKDKASVQSGGLLKEKKSKRQLKRERRQEQKSTKNICPEVAKTGDISSCPYKDKCRFSHDLEAFKAQKPTDLEGECPVFKAEGSCPYGLACRFSSTHTEDMPSGNLNGRRKTSEINGLSKNVQRLLWKNKMRFPKADASLRALGLWESSKLKRNDLEDKEGSNIDSNNCHKADNNGSCEVTNDLGSNLESSAEDTKVDGDGNLDSNSPCTQKRRKTEENSGLNAAEKEGMCVTDQNIEKSCIQAELDVVTDVIPRETDQSMKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTIARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPVRMKNVVEVASGTVEKPITVKVRTAYFEGKNRVDSIIADMSSWGANAVTIHGRSRQQRYSKLADWDYVYQCVRKAPNTLQVVGNGDIFSFVDWNNHKAECSELATCMIARGALIKPWIFTEIKEQRHWDISSGERLHVLKDFVHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVIPQRLNWRLPSYYGRDDLENLMASDSAADWIRISEMLLGKVPDGFSFTPKHKSNAYDSAQNG 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2099 704 Gene3D - 102 182 - -
Acco01g2099 704 Gene3D Aldolase class I 348 590 IPR013785 -
Acco01g2099 704 ProSiteProfiles Zinc finger C3H1-type profile. 151 176 IPR000571 GO:0046872
Acco01g2099 704 Coils Coil 88 108 - -
Acco01g2099 704 SMART c3hfinal6 108 137 IPR000571 GO:0046872
Acco01g2099 704 SMART c3hfinal6 148 175 IPR000571 GO:0046872
Acco01g2099 704 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 40 698 - -
Acco01g2099 704 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 103 182 - -
Acco01g2099 704 SUPERFAMILY FMN-linked oxidoreductases 352 665 - -
Acco01g2099 704 MobiDBLite consensus disorder prediction 243 268 - -
Acco01g2099 704 ProSitePatterns Uncharacterized protein family UPF0034 signature. 436 454 IPR018517 GO:0008033|GO:0017150|GO:0050660
Acco01g2099 704 MobiDBLite consensus disorder prediction 56 112 - -
Acco01g2099 704 Pfam Dihydrouridine synthase (Dus) 355 590 IPR035587 -
Acco01g2099 704 CDD DUS_like_FMN 352 587 IPR035587 -
Acco01g2099 704 ProSiteProfiles Zinc finger C3H1-type profile. 107 138 IPR000571 GO:0046872
Acco01g2099 704 MobiDBLite consensus disorder prediction 232 298 - -
Acco01g2099 704 MobiDBLite consensus disorder prediction 71 94 - -
Acco01g2099 704 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 348 590 - -
Acco01g2099 704 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2099 Acco-ChrAcco01 36869874 36874548 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco01g2099 Dus 2.2e-50 CL0036