Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2090 ATGCGTGGCATAACTATAAGAAAAGGAGAAAAAGATAGAGATAAAACCAATAATCCAGCACCCGTTTCGCTCGCGAATCTCCCTCTATTTGTTTCTTTGCTTTCTTTCTACCCACAAAAAATTAAAAACTCTTGTGTGGTTTTGCATCATTCCTTCCTTCGTCTTCTTCTATCAGAAATGGAGTTTGCTGGAGCCGAAGCTTTTAAACCCAGTTTACGAACAGAACTTTCTTTTCAACAGAAAACGTTTTGCGAGGAAATTTTCTACCTGAACGGAAACAACGTCGTCGCCGGCGAGGATTTCTCGGTGGATGACCTTCTTGACTTGTCTCACGACGAGTTTCAGCACGTGCTTGTTGAAAAGGAAAAAGATTTCGAAGACGACGAGGAGAAAAAAGATGGTTCCTTTGTTTCCGACGATGTGAACTCCAACTCCGGCAGTGATTCCGGCGCCGGAGATTCAGAGTCGGCTTTCGCAAGCGAGCTCGCTGTTCCGGCCGATGATTTAGCAGAGCTAGAGTGGGTTTCTCACTTTGTAGACGATTCTCTTCTAGAGTTCTCGTGTCCGGTTTACTCAGAGCAGTCGAAGGCGGAGAAGCACTCTGCGACGGAGCTCAGACCGGACTCAACGACGGCGAAAACGCCTCGTTTTCCGTCTAAAATTCCGGTGAAAACGAGAAGTACTAAATATAGAAAAGCCAACGCTCGCGTCTGGTCATCCAGCTCGATTCTCTTCGTTTCCTGGTCATCTCCGAAGTCATCCCCGGCTGTCGTCTTCACCGGTGAACCGCCGGCGACGAAGCAAAAAAAGAGGAAGCCGGTTGAAGGGGAAACGAGTGGGTCCCAGCTACAGCGTCGGTGCAGTCATTGTCATGTGCAAAAGACGCCACAATGGAGAACCGGTCCACTAGGCGCCAAAACCCTGTGTAACGCGTGCGGTGTCCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCAGCCTGTAGCCCAACTTTCTCGACCGACTTGCACTCAAATAGCCATCGCAAAGTGTTGGAGATTAGGAAGAGGAAGGAGACTGTTGGTCCGGAGGCCGGTTTGAGCCAAACACAAATGGTCCAGAGCTTCTGA 1113 0.4915 MRGITIRKGEKDRDKTNNPAPVSLANLPLFVSLLSFYPQKIKNSCVVLHHSFLRLLLSEMEFAGAEAFKPSLRTELSFQQKTFCEEIFYLNGNNVVAGEDFSVDDLLDLSHDEFQHVLVEKEKDFEDDEEKKDGSFVSDDVNSNSGSDSGAGDSESAFASELAVPADDLAELEWVSHFVDDSLLEFSCPVYSEQSKAEKHSATELRPDSTTAKTPRFPSKIPVKTRSTKYRKANARVWSSSSILFVSWSSPKSSPAVVFTGEPPATKQKKRKPVEGETSGSQLQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSTDLHSNSHRKVLEIRKRKETVGPEAGLSQTQMVQSF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2090 370 MobiDBLite consensus disorder prediction 138 154 - -
Acco01g2090 370 MobiDBLite consensus disorder prediction 197 220 - -
Acco01g2090 370 SMART GATA_3 281 331 IPR000679 GO:0006355|GO:0043565
Acco01g2090 370 ProSitePatterns GATA-type zinc finger domain. 287 312 IPR000679 GO:0006355|GO:0043565
Acco01g2090 370 CDD ZnF_GATA 286 334 IPR000679 GO:0006355|GO:0043565
Acco01g2090 370 MobiDBLite consensus disorder prediction 125 156 - -
Acco01g2090 370 ProSiteProfiles GATA-type zinc finger domain profile. 281 317 IPR000679 GO:0006355|GO:0043565
Acco01g2090 370 PANTHER GATA TRANSCRIPTION FACTOR 91 362 - -
Acco01g2090 370 FunFam GATA transcription factor 278 364 - -
Acco01g2090 370 Gene3D - 278 354 IPR013088 GO:0006355|GO:0008270
Acco01g2090 370 MobiDBLite consensus disorder prediction 259 280 - -
Acco01g2090 370 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 283 344 - -
Acco01g2090 370 Pfam GATA zinc finger 287 320 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2090 Acco-ChrAcco01 36780091 36781929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2090 67 369 C2C2-Gata Transcription Factor Family AT5G66320 41.888 4.46e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco01g2090 GATA 5e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g2090 01 36780091 36781929 Acco01g2090 01 36780091 36781929 ECH