Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2078 ATGAAGATCCAATGTGATGTGTGTGAGAAAATGGAAGCTTCAGTGTTCTGTGTTGCAGACGAAGCTGCTCTCTGCCATGGATGTGATTCAAGTATCCACCAAGCCAACAAGCTCGCTGGCAAACACACACGCTTCTCTCTTCACCGCCCCTCCTCTAAAGATTCACCCCTCTGTGATATCTGCCAAGAGAAGCAAGCATATATTTTCTGCAAAGAAGACAGAGCAATACTATGTAGAGACTGTGACCTTAACATCCACATAGCCAATGAACACACCCAGAAACACGACAGGTTTCTTCTCACAGGCGTCAAGCTTTCTGATTCTTCTTCTTCTTCTCCTGGGGACCCATCTTCATCTTCCTGCAATAATGCCATGACCACTGAGCATAAGGGGGTCGATAATAATAATAATAATGAACGTCGTGAAGCAAGAAGATCGAGTCGGAATAATTATTCCAACACAATGAACAGAGCCAGATGGGATTGCAATAATGAGAATTTCAGTTCTTCTGTGAATTCGGATACTATGGTTAGTGACACAGAAGCAGTTTCTACGAGCAGCTTTTCTGAGTATTTGATTGAGACGATACCTGGGTTTTGCTTTGAAGACCTGATTGATGCTTCGTTCCCACCTCACTGTAAGAATGATCAGGATGAGCATGAACCTACATTTGCTGATGAATATTTTGAAGATCTTCAATTTCTTGTTATTTTTATTTTTCTCGTGATCCTTTTGAGAAGACCCTTGATAGTTTTATATTACTTCCTTTGA 771 0.4137 MKIQCDVCEKMEASVFCVADEAALCHGCDSSIHQANKLAGKHTRFSLHRPSSKDSPLCDICQEKQAYIFCKEDRAILCRDCDLNIHIANEHTQKHDRFLLTGVKLSDSSSSSPGDPSSSSCNNAMTTEHKGVDNNNNNERREARRSSRNNYSNTMNRARWDCNNENFSSSVNSDTMVSDTEAVSTSSFSEYLIETIPGFCFEDLIDASFPPHCKNDQDEHEPTFADEYFEDLQFLVIFIFLVILLRRPLIVLYYFL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2078 256 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Acco01g2078 256 CDD Bbox1_BBX-like 5 47 - -
Acco01g2078 256 Gene3D Classic Zinc Finger 1 99 - -
Acco01g2078 256 CDD Bbox1_BBX-like 57 100 - -
Acco01g2078 256 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 209 - -
Acco01g2078 256 FunFam B-box zinc finger protein 21 1 98 - -
Acco01g2078 256 MobiDBLite consensus disorder prediction 133 147 - -
Acco01g2078 256 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Acco01g2078 256 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Acco01g2078 256 SMART bboxneu5 53 100 IPR000315 GO:0008270
Acco01g2078 256 SMART bboxneu5 4 47 IPR000315 GO:0008270
Acco01g2078 256 MobiDBLite consensus disorder prediction 105 155 - -
Acco01g2078 256 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Acco01g2078 256 MobiDBLite consensus disorder prediction 105 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2078 Acco-ChrAcco01 36620080 36621926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2078 1 210 C2C2-CO-like Transcription Factor Family AT1G75540 50.704 2.34e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Acco01g2078 zf-B_box 1.4e-07 No_clan