Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2071 ATGGCTAGGCCAAGAGCTCAAAGACGAACCCTTGATTCTTACACAGTCAAACACATAAACAAAACCATTACGGCCGGCGACTGCGTGCTTATGCGGCCGTCCGACCCGTCAAATCCGTCGTATGTGGCTAGGATTGAGCGGATCGAAGCTGACTCGCGTGGCGCCAACGTGAAGGTCCACGTCCAGTGGTATTACCGGCCGGAGGAGTCAATTGGCGGGCGGAGGCAGTTCCACGGTTCTAAGGAGGTTTTCCTTTCTGATCATTTTGATGTTCAAAGTGCCGATACGATAGAAGGCAAGTGTGCGGTTCACAGTTTCAAGAGCTACACGAAACTTGATGCTGTTGGAAACGAGGATTTCTTCTGTCGCTTCGAATACAATTCCGCCACCGGTGCTTTCAATCCTGACAGAGTGGCTGTGTACTGCAAATGTGAGATGCCCTACAACCCTGACGACCTAATGGTCCAGTGTGAGAGTTGCAGTGATTGGTTTCATCCTGCTTGTATAGATATGACTGTGGAGGAAGCCAAAGGGCTTGACCACTTCTTTTGTGAAAACTGTTCTGGCAATGGCCATCAGAATGCTCAAAATTCTCATACTTAA 603 0.4925 MARPRAQRRTLDSYTVKHINKTITAGDCVLMRPSDPSNPSYVARIERIEADSRGANVKVHVQWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCAVHSFKSYTKLDAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIDMTVEEAKGLDHFFCENCSGNGHQNAQNSHT 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2071 200 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Acco01g2071 200 SMART BAH_4 21 137 IPR001025 GO:0003682
Acco01g2071 200 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Acco01g2071 200 PANTHER OS08G0421900 PROTEIN 5 197 - -
Acco01g2071 200 SMART PHD_3 141 188 IPR001965 -
Acco01g2071 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 200 IPR013083 -
Acco01g2071 200 Pfam BAH domain 22 136 IPR001025 GO:0003682
Acco01g2071 200 Gene3D - 3 135 IPR043151 -
Acco01g2071 200 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Acco01g2071 200 SUPERFAMILY FYVE/PHD zinc finger 131 190 IPR011011 -
Acco01g2071 200 Pfam PHD-finger 141 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2071 Acco-ChrAcco01 36539221 36541300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2071 31 139 Core DNA Replication Machinery Family AT4G14700 27.523 3.95e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco01g2071 BAH 1.6e-22 No_clan