Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2028 ATGTTGCGTTGTCTGAACAGTTCGGAGAATCTCTCTGAGTCCTGCTCTGATATGACATTGTTAGAAAGGCAAAGAGACCGGATGAAATGGCAACTATCACAGTTTCATCATCATCATCCGAACCAGAGCTTCTTTTCTGGTAGTGGATTTGACGGGGGGTTCTCGTCTCTGCAACTTCCCAATCCAGGGGGGATGATGATGATGATGAATAATGGCGGCGGCGGTTCTGGGCTTGGTGAGGTGGCTGCTAATGCTGGATCCGTGAAGCCCGACCCGGGTCCGGAAAATGGATGGCCCGAAATGGGCAAGGTGGACTTGCCTGGTGTGGGATTTGTGTCTTCTGGATTTAATGCGAGCTCTGCAATTTCAAGGACTTCTAGCTGCCCGCCGACTGTGGCGGCGGCGGAAGCCACGCCGAAGGAGAAGATGAGATCCACAAGTGGGAGAGAGAGCTTCAAGAAGAGGAAATCTGAAAAAGCTCAGATCCTCAAGGTTCCTGTGGCAGAAAATGATAAGAACAAGAAAAGCAAAACGAGTGGTGAGGAATTAGGGGAATCCAAAGTCACAGCAACAGATAATAATGATAACAATAATGACAAGAACAGAGAAACATCAGCGGAATCTTCGAAAGAGAATTCAAAAGCGTCCGAGGTTCAAAATCAAAAGCCAGACTACATTCATGTCCGAGCACGTCGAGGACAAGCCACTGATAGCCATAGCTTGGCCGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTACCTGCAAAGTTTAGTGCCTGGCTGTAACAAAATCACAGGAAAAGCTGGCATGCTCGATGAAATCATCAATTATGTTCAATCTCTTCAACGACAAGTAGAGTTTTTGTCAATGAAACTAGCTGCCGTAAACCCAACGATTGATTTCAACATTGACGATCTGTTTACCAAAGAGGTTTTTCCAGCTTGTGCTCCCACGAGTTTTCCAGCCATAGATATGACATTGACACCTAATCCTGCTGCCTATCTTCAACAGTTTGATCCAACTCAACATGTTGCTTCATGTTCCGGATTAGATATGGGCATTATTAACCCTCCAGATTTAGGGCTTCGAAGGACCATTAGTGCCCCTCTTTCTTTGCCTCACGAAACGTTTCTTGACTCTTCCTGTTTCAATCAAATTATGCCATTTTCAACCTGTGAAGGTGATTTACAGAACCTGTACAATATGATTTTTGATCAAGCCAGATCAACGACGTCGTCTTTTCCTTCTCAGCCATTCACAGGCCTAATTGAAGCTAGCAATCTAAAGATGGAGATGTGA 1308 0.4511 MLRCLNSSENLSESCSDMTLLERQRDRMKWQLSQFHHHHPNQSFFSGSGFDGGFSSLQLPNPGGMMMMMNNGGGGSGLGEVAANAGSVKPDPGPENGWPEMGKVDLPGVGFVSSGFNASSAISRTSSCPPTVAAAEATPKEKMRSTSGRESFKKRKSEKAQILKVPVAENDKNKKSKTSGEELGESKVTATDNNDNNNDKNRETSAESSKENSKASEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQSLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPTIDFNIDDLFTKEVFPACAPTSFPAIDMTLTPNPAAYLQQFDPTQHVASCSGLDMGIINPPDLGLRRTISAPLSLPHETFLDSSCFNQIMPFSTCEGDLQNLYNMIFDQARSTTSSFPSQPFTGLIEASNLKMEM 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2028 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 284 IPR011598 GO:0046983
Acco01g2028 435 MobiDBLite consensus disorder prediction 196 210 - -
Acco01g2028 435 MobiDBLite consensus disorder prediction 142 162 - -
Acco01g2028 435 MobiDBLite consensus disorder prediction 168 182 - -
Acco01g2028 435 FunFam Basic helix-loop-helix transcription factor 231 303 - -
Acco01g2028 435 MobiDBLite consensus disorder prediction 121 224 - -
Acco01g2028 435 CDD bHLH_AtBPE_like 224 309 - -
Acco01g2028 435 Gene3D - 231 303 IPR036638 GO:0046983
Acco01g2028 435 SMART finulus 240 290 IPR011598 GO:0046983
Acco01g2028 435 Pfam Helix-loop-helix DNA-binding domain 238 285 IPR011598 GO:0046983
Acco01g2028 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 303 IPR036638 GO:0046983
Acco01g2028 435 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 137 336 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2028 Acco-ChrAcco01 36151813 36154178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2028 145 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 44.727 1.18e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g2028 HLH 2.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g2028 01 36151813 36154178 Acco01g2028 01 36151813 36154178 ECH