Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2022 ATGGAACTTCAACCACGAACGGAATTGGTGGCGATGGATGTGAAAAATGGTGAAGCAATTTTGAAAGTTGTGATGCCTCTTCACTTTCATCTCTCATTATCATTTGAGTCCCTTTTTTATCATCCCGCATCAATGGGTTCTGCAGATGTTGAGTACCGTTGCTTTGTCGGTGGGCTGGCATGGGCTACCGACAACGATGCCCTCAGCCAGGCCTTTGCTCCTTTCGGCGATGTTATCGAATCGAAGATTATAAATGATCGTGAGACCGGAAGGTCCAGAGGGTTCGGATTCGTGACATTCTCCTCAGAGCAGTCCATGAGGGATGCGATCGAAAGCATGAATGGTCAGAGCCTTGATGGCCGGAACATCACTGTGAACGAAGCTCAGTCTCGAGGAAGAGGCGGCGGCGGCGGCGGTTACGGCGATGGGGGTGGCTACAGCCGTGGTGGAGGTGGATACGGAGGCGGTGGTCGCCGCGAGGGTGGATACAACAAGAGCGGAGGTGGAGGATATGGCGGCGGTTACGGTGATCGTGGATCTCGCTACTCTAGGCGTGGCGAGTCCGATGGAAGCTGGAAGAATTAA 585 0.5333 MELQPRTELVAMDVKNGEAILKVVMPLHFHLSLSFESLFYHPASMGSADVEYRCFVGGLAWATDNDALSQAFAPFGDVIESKIINDRETGRSRGFGFVTFSSEQSMRDAIESMNGQSLDGRNITVNEAQSRGRGGGGGGYGDGGGYSRGGGGYGGGGRREGGYNKSGGGGYGGGYGDRGSRYSRRGESDGSWKN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2022 194 SMART rrm1_1 53 126 IPR000504 GO:0003723
Acco01g2022 194 Gene3D - 40 147 IPR012677 -
Acco01g2022 194 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 49 183 - -
Acco01g2022 194 MobiDBLite consensus disorder prediction 113 194 - -
Acco01g2022 194 SUPERFAMILY RNA-binding domain, RBD 52 162 IPR035979 GO:0003676
Acco01g2022 194 MobiDBLite consensus disorder prediction 180 194 - -
Acco01g2022 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Acco01g2022 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 123 IPR000504 GO:0003723
Acco01g2022 194 CDD RRM2_NsCP33_like 53 128 - -
Acco01g2022 194 MobiDBLite consensus disorder prediction 113 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2022 Acco-ChrAcco01 36078259 36081891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2022 54 131 Eukaryotic Initiation Factors Gene Family AT2G23350 32.051 8.47e-08 49.7