Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Acco01g1990 | ATGGAAGATGACGACGAAGTCGTCTCGTGCTCTTCCGGTTCCGATGACGACAACGAGATCTTTTCCGATGAAAGTGAAGATACCCTCGGTAAGGATGATCGGTCAGAGGCCGACGTTTATTCTCTATCCGATGACGAGAGGAAATCGAAGAATATCGATGCTCTTGTGAGAGGCAACCTTGTCGTGAAGACACAATCGCTGCTTCCACGAGTTCTTTCTGTAACACAAGGAGCAGCTGTTTGTAGAAAGCCCTTTAAACCTCCCAGCTCCGATGGCTACAATAATGGAAATGAAGAGCTTACACGTCGCCTTTGTGCCCGAAAAAGGTTTGTCCCGTGGGGCTCTACCAGACCGGTGTTGGTGGCAATTACAAACCGGTTAAGTTCACCAATAAGCGTCGAAGAGGATGTCGCCGAAGAGGAAGTTTCTTTGCCACCTGGGATTGAACCTCTAGTGTTGTGGCAGCCTGAAGGCTTTGAGGAGGAGGGCCGTAATTTGACTCCAATAGCAGTGGACCCGTTGCTTGTTCGTTTCCTTAGACCACACCAGAGAGAAGGAGTTCAGTTTATGTTTGAATGTGTTTCAGGGCTACTTAGCACCGCAAATATTCACGGGTGCATCCTGGCAGATGATATGGGGCAATCTACTTTTGATACTGCATGCAGTTTGGGAAAGACTTTGCAGTCAATCACACTTTTGTATACACTTCTTTGTCAAGGGTTTGATGGAAAGCCAATGGTTAGAAAAGCCATCATTGTGACCCCTACCAGCCTTGTAAGTAATTGGGAAGCTGAAATTAAGAAGTGGGTTGGAGAAAGAGTTCGTCTTGTTGCTATGTGTGAAAGTACAAGAGATGATGTCATTTCTGGAATTGACAATTTTATAAGTCCCCACAGCTCTCTACAGGTGCTGATAGTATCATATGAGACTTTCCGAATGCATTCATCAAAATTTGGCCATAGTGACTCTTGCGATCTACTCATATGTGATGAGGCTCACAGGCTTAAAAATGATCAGACAATTACAAACCGGGCATTGGCTGCTCTCTCATGCAGACGTAGAGTGTTGCTTTCAGGAACTCCTTTGCAGAATGACCTAGAGGAATTCTTTGCCATGGTTAACTTCACTAATCCTGGAATATTAGGTGACATTACACATTTTCGCCGGTACTTTGAGGGACCAATTATTTGTGGAAGAGAACCTACAGCCTCTTCAGATGAGAAGAAGCTAGGCGCTGACCGCTCTGCAGATTTAAGTGCGAAAGTTAATCAGTTTATATTGAGAAGGACTAATGCATTGTTGTCAAATCACTTGCCGCCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTAACGCAACTCCAGTCAGACCTATATAAATACTTTATACAATCCAAAAATGTCAAACGCGCAATTGTTGAAGACGTTAGGCAATCGAAGATTTTAGCCTACATAACAGTTCTTAAAAAGTTGTGCAACCATCCAAAGCTTATATATGATACTATCCGAAGTGGAAGTCCAGGAACTTCGGGTTTTGAGGACTGCATTCGGTTCTTCCCCCCAGAGATGTTATCAGGAAGGTCTGGTTCATGGACTGGAGGGGATGGGGCTTGGATTGAGTTGTCTGGAAAAATGCATGTCTTAGCAAGATTCCTTGCCCAGATACGGCAAAGGACCAATGACCGCATTGTCCTTGTCTCAAACTACACACAGACTCTGGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCGTTCTTGAGGCTTGATGGTGCAACTTCAATCAGTAAAAGGCAGAAGTTAGTAAACCGCTTCAATGACCAATCTAAGGACGAATTCGCTTTTCTTTTGAGCAGCAAGGCTGGTGGCTGTGGCCTCAATTTAATTGGAGGAAATCGATTGGTCTTGTTCGATCCTGATTGGAATCCTGCAAACGACAAACAAGCTGCAGCAAGAGTTTGGAGGGACGGGCAGAAGAAAAGAGTGTACATTTATAGATTTTTGAGTGCGGGGACAATAGAGGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTACAAAAGGTCATTCAGAAGGAGCAAACAGATAACCTTGAGACACTGGGCAACTTTTCAACAGAGGTCCTTCGCGATCTGTTCTCATTTCATGAAAGTGTCAAGTCAGAGATTCATGAAAGGATGCATTGCACTCGGTGCCAGACAAATGATGATGGGCCTCAGAGCGAAGATGGGAAATATGCAGCTCATTCAACAGTAAGTAACGGTGAATCTGATGAGGAAACCTCTGATGATATAGGTGGATTTGCCAAACTTGCAGGCTGTATACACAAGTTAAAGAAATCAGAAAAGCAGGTAGGGACCCCCTTGGAAGAAGATTTAGGTAGCTGGGGCCATCATTTCTTTCCAACAACTGTACCGGACGCTATTCTTCAGGCTTCAGCCGGAGATGAGGTGACCTTTGTTTTTACAAACCAAGTTGATGGAAAGCTGACACCAATTGATTCAACCATCAGTTCAGAGATACAGCAAGAGAAAAGCAAGGAACTGATCCAGCTAAAAGGGAACGTCAAACAAAATCCCGGTCTTTCTTTAGCTCAGAAGCCATCTTACTCCCTCAAGCCTTCAATGAGGCCACCATTGAGTTGTGTTAGAGCGAAGGAAAATATACCAACACAAGCAGCTTTAAATTCCAAAAATACCCTTGTAAATCAATTACCACAGAAAAGATCATGTCCCACTTATGGCGATACTGATGAATTAGAATAA | 2769 | 0.4399 | MEDDDEVVSCSSGSDDDNEIFSDESEDTLGKDDRSEADVYSLSDDERKSKNIDALVRGNLVVKTQSLLPRVLSVTQGAAVCRKPFKPPSSDGYNNGNEELTRRLCARKRFVPWGSTRPVLVAITNRLSSPISVEEDVAEEEVSLPPGIEPLVLWQPEGFEEEGRNLTPIAVDPLLVRFLRPHQREGVQFMFECVSGLLSTANIHGCILADDMGQSTFDTACSLGKTLQSITLLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGERVRLVAMCESTRDDVISGIDNFISPHSSLQVLIVSYETFRMHSSKFGHSDSCDLLICDEAHRLKNDQTITNRALAALSCRRRVLLSGTPLQNDLEEFFAMVNFTNPGILGDITHFRRYFEGPIICGREPTASSDEKKLGADRSADLSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTQLQSDLYKYFIQSKNVKRAIVEDVRQSKILAYITVLKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGDGAWIELSGKMHVLARFLAQIRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGATSISKRQKLVNRFNDQSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQKEQTDNLETLGNFSTEVLRDLFSFHESVKSEIHERMHCTRCQTNDDGPQSEDGKYAAHSTVSNGESDEETSDDIGGFAKLAGCIHKLKKSEKQVGTPLEEDLGSWGHHFFPTTVPDAILQASAGDEVTFVFTNQVDGKLTPIDSTISSEIQQEKSKELIQLKGNVKQNPGLSLAQKPSYSLKPSMRPPLSCVRAKENIPTQAALNSKNTLVNQLPQKRSCPTYGDTDELE | 922 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Acco01g1990 | 922 | MobiDBLite | consensus disorder prediction | 895 | 912 | - | - | |
Acco01g1990 | 922 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Acco01g1990 | 922 | MobiDBLite | consensus disorder prediction | 24 | 42 | - | - | |
Acco01g1990 | 922 | MobiDBLite | consensus disorder prediction | 895 | 922 | - | - | |
Acco01g1990 | 922 | MobiDBLite | consensus disorder prediction | 734 | 756 | - | - | |
Acco01g1990 | 922 | CDD | SF2_C_SNF | 540 | 668 | - | - | |
Acco01g1990 | 922 | SMART | helicmild6 | 573 | 657 | IPR001650 | - | |
Acco01g1990 | 922 | SMART | ultradead3 | 175 | 387 | IPR014001 | - | |
Acco01g1990 | 922 | Gene3D | - | 156 | 428 | IPR038718 | - | |
Acco01g1990 | 922 | Gene3D | - | 451 | 719 | - | - | |
Acco01g1990 | 922 | FunFam | DNA repair and recombination protein RAD54 | 150 | 428 | - | - | |
Acco01g1990 | 922 | FunFam | DNA repair and recombination protein RAD54-like | 535 | 706 | - | - | |
Acco01g1990 | 922 | CDD | DEXHc_RAD54 | 179 | 429 | - | - | |
Acco01g1990 | 922 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 433 | 733 | IPR027417 | - | |
Acco01g1990 | 922 | MobiDBLite | consensus disorder prediction | 733 | 763 | - | - | |
Acco01g1990 | 922 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 546 | 703 | IPR001650 | - | |
Acco01g1990 | 922 | Pfam | SNF2-related domain | 182 | 497 | IPR000330 | GO:0005524|GO:0140658 | |
Acco01g1990 | 922 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 223 | 379 | IPR014001 | - | |
Acco01g1990 | 922 | Gene3D | - | 429 | 738 | IPR027417 | - | |
Acco01g1990 | 922 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Acco01g1990 | 922 | PANTHER | SNF2/RAD54 FAMILY MEMBER | 67 | 849 | - | - | |
Acco01g1990 | 922 | Pfam | Helicase conserved C-terminal domain | 547 | 656 | IPR001650 | - | |
Acco01g1990 | 922 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 165 | 429 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Acco01g1990 | Acco-ChrAcco01 | 35671956 | 35679460 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Acco01g1990 | 537 | 714 | RAD5 or RAD16-like Gene Family | AT5G43530 | 36.872 | 4.74e-24 | 107 |