Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1990 ATGGAAGATGACGACGAAGTCGTCTCGTGCTCTTCCGGTTCCGATGACGACAACGAGATCTTTTCCGATGAAAGTGAAGATACCCTCGGTAAGGATGATCGGTCAGAGGCCGACGTTTATTCTCTATCCGATGACGAGAGGAAATCGAAGAATATCGATGCTCTTGTGAGAGGCAACCTTGTCGTGAAGACACAATCGCTGCTTCCACGAGTTCTTTCTGTAACACAAGGAGCAGCTGTTTGTAGAAAGCCCTTTAAACCTCCCAGCTCCGATGGCTACAATAATGGAAATGAAGAGCTTACACGTCGCCTTTGTGCCCGAAAAAGGTTTGTCCCGTGGGGCTCTACCAGACCGGTGTTGGTGGCAATTACAAACCGGTTAAGTTCACCAATAAGCGTCGAAGAGGATGTCGCCGAAGAGGAAGTTTCTTTGCCACCTGGGATTGAACCTCTAGTGTTGTGGCAGCCTGAAGGCTTTGAGGAGGAGGGCCGTAATTTGACTCCAATAGCAGTGGACCCGTTGCTTGTTCGTTTCCTTAGACCACACCAGAGAGAAGGAGTTCAGTTTATGTTTGAATGTGTTTCAGGGCTACTTAGCACCGCAAATATTCACGGGTGCATCCTGGCAGATGATATGGGGCAATCTACTTTTGATACTGCATGCAGTTTGGGAAAGACTTTGCAGTCAATCACACTTTTGTATACACTTCTTTGTCAAGGGTTTGATGGAAAGCCAATGGTTAGAAAAGCCATCATTGTGACCCCTACCAGCCTTGTAAGTAATTGGGAAGCTGAAATTAAGAAGTGGGTTGGAGAAAGAGTTCGTCTTGTTGCTATGTGTGAAAGTACAAGAGATGATGTCATTTCTGGAATTGACAATTTTATAAGTCCCCACAGCTCTCTACAGGTGCTGATAGTATCATATGAGACTTTCCGAATGCATTCATCAAAATTTGGCCATAGTGACTCTTGCGATCTACTCATATGTGATGAGGCTCACAGGCTTAAAAATGATCAGACAATTACAAACCGGGCATTGGCTGCTCTCTCATGCAGACGTAGAGTGTTGCTTTCAGGAACTCCTTTGCAGAATGACCTAGAGGAATTCTTTGCCATGGTTAACTTCACTAATCCTGGAATATTAGGTGACATTACACATTTTCGCCGGTACTTTGAGGGACCAATTATTTGTGGAAGAGAACCTACAGCCTCTTCAGATGAGAAGAAGCTAGGCGCTGACCGCTCTGCAGATTTAAGTGCGAAAGTTAATCAGTTTATATTGAGAAGGACTAATGCATTGTTGTCAAATCACTTGCCGCCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTAACGCAACTCCAGTCAGACCTATATAAATACTTTATACAATCCAAAAATGTCAAACGCGCAATTGTTGAAGACGTTAGGCAATCGAAGATTTTAGCCTACATAACAGTTCTTAAAAAGTTGTGCAACCATCCAAAGCTTATATATGATACTATCCGAAGTGGAAGTCCAGGAACTTCGGGTTTTGAGGACTGCATTCGGTTCTTCCCCCCAGAGATGTTATCAGGAAGGTCTGGTTCATGGACTGGAGGGGATGGGGCTTGGATTGAGTTGTCTGGAAAAATGCATGTCTTAGCAAGATTCCTTGCCCAGATACGGCAAAGGACCAATGACCGCATTGTCCTTGTCTCAAACTACACACAGACTCTGGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCGTTCTTGAGGCTTGATGGTGCAACTTCAATCAGTAAAAGGCAGAAGTTAGTAAACCGCTTCAATGACCAATCTAAGGACGAATTCGCTTTTCTTTTGAGCAGCAAGGCTGGTGGCTGTGGCCTCAATTTAATTGGAGGAAATCGATTGGTCTTGTTCGATCCTGATTGGAATCCTGCAAACGACAAACAAGCTGCAGCAAGAGTTTGGAGGGACGGGCAGAAGAAAAGAGTGTACATTTATAGATTTTTGAGTGCGGGGACAATAGAGGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTACAAAAGGTCATTCAGAAGGAGCAAACAGATAACCTTGAGACACTGGGCAACTTTTCAACAGAGGTCCTTCGCGATCTGTTCTCATTTCATGAAAGTGTCAAGTCAGAGATTCATGAAAGGATGCATTGCACTCGGTGCCAGACAAATGATGATGGGCCTCAGAGCGAAGATGGGAAATATGCAGCTCATTCAACAGTAAGTAACGGTGAATCTGATGAGGAAACCTCTGATGATATAGGTGGATTTGCCAAACTTGCAGGCTGTATACACAAGTTAAAGAAATCAGAAAAGCAGGTAGGGACCCCCTTGGAAGAAGATTTAGGTAGCTGGGGCCATCATTTCTTTCCAACAACTGTACCGGACGCTATTCTTCAGGCTTCAGCCGGAGATGAGGTGACCTTTGTTTTTACAAACCAAGTTGATGGAAAGCTGACACCAATTGATTCAACCATCAGTTCAGAGATACAGCAAGAGAAAAGCAAGGAACTGATCCAGCTAAAAGGGAACGTCAAACAAAATCCCGGTCTTTCTTTAGCTCAGAAGCCATCTTACTCCCTCAAGCCTTCAATGAGGCCACCATTGAGTTGTGTTAGAGCGAAGGAAAATATACCAACACAAGCAGCTTTAAATTCCAAAAATACCCTTGTAAATCAATTACCACAGAAAAGATCATGTCCCACTTATGGCGATACTGATGAATTAGAATAA 2769 0.4399 MEDDDEVVSCSSGSDDDNEIFSDESEDTLGKDDRSEADVYSLSDDERKSKNIDALVRGNLVVKTQSLLPRVLSVTQGAAVCRKPFKPPSSDGYNNGNEELTRRLCARKRFVPWGSTRPVLVAITNRLSSPISVEEDVAEEEVSLPPGIEPLVLWQPEGFEEEGRNLTPIAVDPLLVRFLRPHQREGVQFMFECVSGLLSTANIHGCILADDMGQSTFDTACSLGKTLQSITLLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGERVRLVAMCESTRDDVISGIDNFISPHSSLQVLIVSYETFRMHSSKFGHSDSCDLLICDEAHRLKNDQTITNRALAALSCRRRVLLSGTPLQNDLEEFFAMVNFTNPGILGDITHFRRYFEGPIICGREPTASSDEKKLGADRSADLSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTQLQSDLYKYFIQSKNVKRAIVEDVRQSKILAYITVLKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGDGAWIELSGKMHVLARFLAQIRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGATSISKRQKLVNRFNDQSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQKEQTDNLETLGNFSTEVLRDLFSFHESVKSEIHERMHCTRCQTNDDGPQSEDGKYAAHSTVSNGESDEETSDDIGGFAKLAGCIHKLKKSEKQVGTPLEEDLGSWGHHFFPTTVPDAILQASAGDEVTFVFTNQVDGKLTPIDSTISSEIQQEKSKELIQLKGNVKQNPGLSLAQKPSYSLKPSMRPPLSCVRAKENIPTQAALNSKNTLVNQLPQKRSCPTYGDTDELE 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1990 922 MobiDBLite consensus disorder prediction 895 912 - -
Acco01g1990 922 MobiDBLite consensus disorder prediction 1 42 - -
Acco01g1990 922 MobiDBLite consensus disorder prediction 24 42 - -
Acco01g1990 922 MobiDBLite consensus disorder prediction 895 922 - -
Acco01g1990 922 MobiDBLite consensus disorder prediction 734 756 - -
Acco01g1990 922 CDD SF2_C_SNF 540 668 - -
Acco01g1990 922 SMART helicmild6 573 657 IPR001650 -
Acco01g1990 922 SMART ultradead3 175 387 IPR014001 -
Acco01g1990 922 Gene3D - 156 428 IPR038718 -
Acco01g1990 922 Gene3D - 451 719 - -
Acco01g1990 922 FunFam DNA repair and recombination protein RAD54 150 428 - -
Acco01g1990 922 FunFam DNA repair and recombination protein RAD54-like 535 706 - -
Acco01g1990 922 CDD DEXHc_RAD54 179 429 - -
Acco01g1990 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 733 IPR027417 -
Acco01g1990 922 MobiDBLite consensus disorder prediction 733 763 - -
Acco01g1990 922 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 546 703 IPR001650 -
Acco01g1990 922 Pfam SNF2-related domain 182 497 IPR000330 GO:0005524|GO:0140658
Acco01g1990 922 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 223 379 IPR014001 -
Acco01g1990 922 Gene3D - 429 738 IPR027417 -
Acco01g1990 922 MobiDBLite consensus disorder prediction 1 23 - -
Acco01g1990 922 PANTHER SNF2/RAD54 FAMILY MEMBER 67 849 - -
Acco01g1990 922 Pfam Helicase conserved C-terminal domain 547 656 IPR001650 -
Acco01g1990 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 429 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1990 Acco-ChrAcco01 35671956 35679460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1990 537 714 RAD5 or RAD16-like Gene Family AT5G43530 36.872 4.74e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco01g1990 SNF2_N 1.2e-47 CL0023