Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Acco01g1976 | ATGGCTCAGCCAACTTCCGACGCCCCCGATCTGAATCAGCAACCGCCGCAGCCGCAGCAGCAATGGACGCAGTCGCATCAGTATCAACAACAATGGATGAACATGCAGTATCCGGCTTCGGCTATGGCGATGATGCAGCACCAGATGATGATGTATCCGCCGCATTATATTCCTTATGTTCACCAATATTACCAGCCGCCTTACCACCACCCGCAATTGAAACAGCCGCCGACACAGCCGCCGCACCACCAGCAGAGCTCCAACGATGAGATCAAGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAACTACCTAAATAGCTGCTTTGCTCACACAGGCGAGGTATATTCAGTCAAGGTTATACGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTTGTTGAGTTTTATTCGCGTGCAACAGCTGAGAAAGTTTTGCAGAGCTACCATGGTACTGTGATGCCAAATACAGATCAGCTATTTCGCCTAAATTGGGCCGCTTTCAGTTCGGGTGACAAGCGATCTGATTCTAATTCAGATTACTCTATATTTGTCGGGGACTTGGCTGTAGATGTTACTGATAATATGCTGCAGGAAACCTTTGCAAGCAGATATTCGTCTTTTAAGGGAGCAAAGGTTGTCATTGATTCCAGCACTGGCCGGTCAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAAAATGAGAGATCCAGGGCACTGACTGAAATGAACGGTCAATATTGCTCAAGTAGGCCAATGAGAATTAGTATTGCAACTCCCAAGAAATCATACGGACATCAACAACATTACTCTTCACAAGCTGTGGTGTTGGCTAATGGATATTCCTCCAATGGTGCTATGGCCCAAGGTTCCCTGTCTGAAGGGGACTCTCTTAATACAACTATATTCGTTGGAGGGCTTGATTCTGACATCAGTGATGAAGATCTAAGACAACCATTTTTGCAATATGGTGATGTTGTCTCTGTGAAAATACCGGTTGGAAAAGGGTGTGGTTTTGTTCAATTTGCTAACAGAAAGAGTGCAGAGGAGGCAATAGAGGCATTGAATGGGATAGTAATAGGGAAACAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCATTGGAGGTCGGATTCCAACGGAGGTCAGCATGGAGGGCAAGGTTATGGTGCTAGACAGCATCAGGCATGA | 1212 | 0.4653 | MAQPTSDAPDLNQQPPQPQQQWTQSHQYQQQWMNMQYPASAMAMMQHQMMMYPPHYIPYVHQYYQPPYHHPQLKQPPTQPPHHQQSSNDEIKTIWLGDLHHWMDENYLNSCFAHTGEVYSVKVIRNKQTGQSEGYGFVEFYSRATAEKVLQSYHGTVMPNTDQLFRLNWAAFSSGDKRSDSNSDYSIFVGDLAVDVTDNMLQETFASRYSSFKGAKVVIDSSTGRSKGYGFVRFADENERSRALTEMNGQYCSSRPMRISIATPKKSYGHQQHYSSQAVVLANGYSSNGAMAQGSLSEGDSLNTTIFVGGLDSDISDEDLRQPFLQYGDVVSVKIPVGKGCGFVQFANRKSAEEAIEALNGIVIGKQTVRLSWGRSPGNKHWRSDSNGGQHGGQGYGARQHQA | 403 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Acco01g1976 | 403 | SUPERFAMILY | RNA-binding domain, RBD | 301 | 399 | IPR035979 | GO:0003676 | |
Acco01g1976 | 403 | SUPERFAMILY | RNA-binding domain, RBD | 63 | 170 | IPR035979 | GO:0003676 | |
Acco01g1976 | 403 | SUPERFAMILY | RNA-binding domain, RBD | 168 | 280 | IPR035979 | GO:0003676 | |
Acco01g1976 | 403 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 304 | 376 | IPR000504 | GO:0003723 | |
Acco01g1976 | 403 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Acco01g1976 | 403 | FunFam | Polyadenylate-binding protein RBP47B | 91 | 171 | - | - | |
Acco01g1976 | 403 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 92 | 172 | IPR000504 | GO:0003723 | |
Acco01g1976 | 403 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 187 | 257 | IPR000504 | GO:0003723 | |
Acco01g1976 | 403 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 306 | 369 | IPR000504 | GO:0003723 | |
Acco01g1976 | 403 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 94 | 161 | IPR000504 | GO:0003723 | |
Acco01g1976 | 403 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 185 | 264 | IPR000504 | GO:0003723 | |
Acco01g1976 | 403 | Gene3D | - | 283 | 403 | IPR012677 | - | |
Acco01g1976 | 403 | MobiDBLite | consensus disorder prediction | 68 | 88 | - | - | |
Acco01g1976 | 403 | CDD | RRM2_SECp43_like | 184 | 263 | - | - | |
Acco01g1976 | 403 | CDD | RRM1_SECp43_like | 93 | 173 | - | - | |
Acco01g1976 | 403 | FunFam | Polyadenylate-binding protein RBP47 | 286 | 402 | - | - | |
Acco01g1976 | 403 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 81 | 380 | - | - | |
Acco01g1976 | 403 | MobiDBLite | consensus disorder prediction | 374 | 403 | - | - | |
Acco01g1976 | 403 | FunFam | Polyadenylate-binding protein RBP47B | 173 | 275 | - | - | |
Acco01g1976 | 403 | Gene3D | - | 91 | 171 | IPR012677 | - | |
Acco01g1976 | 403 | SMART | rrm1_1 | 305 | 372 | IPR000504 | GO:0003723 | |
Acco01g1976 | 403 | SMART | rrm1_1 | 186 | 260 | IPR000504 | GO:0003723 | |
Acco01g1976 | 403 | SMART | rrm1_1 | 93 | 168 | IPR000504 | GO:0003723 | |
Acco01g1976 | 403 | MobiDBLite | consensus disorder prediction | 379 | 403 | - | - | |
Acco01g1976 | 403 | Gene3D | - | 172 | 278 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Acco01g1976 | Acco-ChrAcco01 | 35508713 | 35512815 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Acco01g1976 | 91 | 373 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 26.990 | 1.48e-27 | 113 |