Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1976 ATGGCTCAGCCAACTTCCGACGCCCCCGATCTGAATCAGCAACCGCCGCAGCCGCAGCAGCAATGGACGCAGTCGCATCAGTATCAACAACAATGGATGAACATGCAGTATCCGGCTTCGGCTATGGCGATGATGCAGCACCAGATGATGATGTATCCGCCGCATTATATTCCTTATGTTCACCAATATTACCAGCCGCCTTACCACCACCCGCAATTGAAACAGCCGCCGACACAGCCGCCGCACCACCAGCAGAGCTCCAACGATGAGATCAAGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAACTACCTAAATAGCTGCTTTGCTCACACAGGCGAGGTATATTCAGTCAAGGTTATACGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTTGTTGAGTTTTATTCGCGTGCAACAGCTGAGAAAGTTTTGCAGAGCTACCATGGTACTGTGATGCCAAATACAGATCAGCTATTTCGCCTAAATTGGGCCGCTTTCAGTTCGGGTGACAAGCGATCTGATTCTAATTCAGATTACTCTATATTTGTCGGGGACTTGGCTGTAGATGTTACTGATAATATGCTGCAGGAAACCTTTGCAAGCAGATATTCGTCTTTTAAGGGAGCAAAGGTTGTCATTGATTCCAGCACTGGCCGGTCAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAAAATGAGAGATCCAGGGCACTGACTGAAATGAACGGTCAATATTGCTCAAGTAGGCCAATGAGAATTAGTATTGCAACTCCCAAGAAATCATACGGACATCAACAACATTACTCTTCACAAGCTGTGGTGTTGGCTAATGGATATTCCTCCAATGGTGCTATGGCCCAAGGTTCCCTGTCTGAAGGGGACTCTCTTAATACAACTATATTCGTTGGAGGGCTTGATTCTGACATCAGTGATGAAGATCTAAGACAACCATTTTTGCAATATGGTGATGTTGTCTCTGTGAAAATACCGGTTGGAAAAGGGTGTGGTTTTGTTCAATTTGCTAACAGAAAGAGTGCAGAGGAGGCAATAGAGGCATTGAATGGGATAGTAATAGGGAAACAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCATTGGAGGTCGGATTCCAACGGAGGTCAGCATGGAGGGCAAGGTTATGGTGCTAGACAGCATCAGGCATGA 1212 0.4653 MAQPTSDAPDLNQQPPQPQQQWTQSHQYQQQWMNMQYPASAMAMMQHQMMMYPPHYIPYVHQYYQPPYHHPQLKQPPTQPPHHQQSSNDEIKTIWLGDLHHWMDENYLNSCFAHTGEVYSVKVIRNKQTGQSEGYGFVEFYSRATAEKVLQSYHGTVMPNTDQLFRLNWAAFSSGDKRSDSNSDYSIFVGDLAVDVTDNMLQETFASRYSSFKGAKVVIDSSTGRSKGYGFVRFADENERSRALTEMNGQYCSSRPMRISIATPKKSYGHQQHYSSQAVVLANGYSSNGAMAQGSLSEGDSLNTTIFVGGLDSDISDEDLRQPFLQYGDVVSVKIPVGKGCGFVQFANRKSAEEAIEALNGIVIGKQTVRLSWGRSPGNKHWRSDSNGGQHGGQGYGARQHQA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1976 403 SUPERFAMILY RNA-binding domain, RBD 301 399 IPR035979 GO:0003676
Acco01g1976 403 SUPERFAMILY RNA-binding domain, RBD 63 170 IPR035979 GO:0003676
Acco01g1976 403 SUPERFAMILY RNA-binding domain, RBD 168 280 IPR035979 GO:0003676
Acco01g1976 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 376 IPR000504 GO:0003723
Acco01g1976 403 MobiDBLite consensus disorder prediction 1 27 - -
Acco01g1976 403 FunFam Polyadenylate-binding protein RBP47B 91 171 - -
Acco01g1976 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Acco01g1976 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 257 IPR000504 GO:0003723
Acco01g1976 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 369 IPR000504 GO:0003723
Acco01g1976 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Acco01g1976 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Acco01g1976 403 Gene3D - 283 403 IPR012677 -
Acco01g1976 403 MobiDBLite consensus disorder prediction 68 88 - -
Acco01g1976 403 CDD RRM2_SECp43_like 184 263 - -
Acco01g1976 403 CDD RRM1_SECp43_like 93 173 - -
Acco01g1976 403 FunFam Polyadenylate-binding protein RBP47 286 402 - -
Acco01g1976 403 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 81 380 - -
Acco01g1976 403 MobiDBLite consensus disorder prediction 374 403 - -
Acco01g1976 403 FunFam Polyadenylate-binding protein RBP47B 173 275 - -
Acco01g1976 403 Gene3D - 91 171 IPR012677 -
Acco01g1976 403 SMART rrm1_1 305 372 IPR000504 GO:0003723
Acco01g1976 403 SMART rrm1_1 186 260 IPR000504 GO:0003723
Acco01g1976 403 SMART rrm1_1 93 168 IPR000504 GO:0003723
Acco01g1976 403 MobiDBLite consensus disorder prediction 379 403 - -
Acco01g1976 403 Gene3D - 172 278 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1976 Acco-ChrAcco01 35508713 35512815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1976 91 373 Eukaryotic Initiation Factors Gene Family AT2G23350 26.990 1.48e-27 113