Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1970 ATGGGGAGACCAAGGTGCTTCTTGGACATTAGCATAGGAGATGAACTTGAAGGAAGGATTGTGGTTGAGCTCTACAACGATGTCGCTCCCAAAACTGCTGAGAATTTCAGGGCTCTCTGTACCGGTGAGAAGGGCATTGGTCCCAACACTGGGGTGCCCCTCCATTTCAAGGGATCTTGCTTTCATCGTGTCATTAAAGGCTTTATGATCCAAGGAGGAGATATATCCGCCGGAGATGGTGCTGGAGGAGAGTCTATTTATGGGCTGAAGTTTGAAGATGAGAATTTTGAGTTGAAACATGAAAGGAAAGGGATGCTAACTATGGCCAATGCTGGTCCTGACACAAATGGGTCTCAGTTCTTTATCACCACAACCCGAACTTCACATCTTGATGGCAAGCATGTTGTATTTGGGAAGGTAGTCAAAGGAATGGGGGTGGTCCGTTCAATTGAGCATGTGACAACTGGTGACAACGACCGCCCCACTCAAGTTGTTAAAATTGTGGACTGTGGGGAAATCCCTCATGGAGCTGACGATGGAATATCTAACTTTTTCAAAGATGGTGATACTTATCCTGATTGGCCAGCTGATCTTAATGAGAGCCCTGGTGAACTTCAATGGTGGATGAATGCTGTAGACTCCATTAAAGCTTTCGGTAATGAGTACTACAAGAAACAAGACTATAAAATGGCTCTTAGGAAGTACCGGAAGGCTTTACGTTACCTGGATATTTGCTGGGAGAAGGAAGGGATTGATGAAGAGTTGAGTTTAAGTTTGAGAAAAACAAAGTCTCAGGTTTTCACAAACAGCTCTGCTTGTAAACTAAAATTGGGGGATCTGAAAGGAGCATTGCTAGATACAGAATTTGCTATGCGCGATGGAGACAACAATGTCAAGGCTTTGTTCCGTCAAGGACAGGCGTACATGGCACTTAATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCATTGGTCTTGGAGCCAAATGACGCTGGAATAAAAAAGGAACTTTCTGCTGCCAGGAAGAAGATTGCTGATAGGCGTGACCTGGAGAAAAAGGCATATAGCAAGATTGAGGGGGTGAAGCTAATCACCATAGCGAATACAAATGTAAAAGATTGA 1125 0.4418 MGRPRCFLDISIGDELEGRIVVELYNDVAPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRVIKGFMIQGGDISAGDGAGGESIYGLKFEDENFELKHERKGMLTMANAGPDTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDNDRPTQVVKIVDCGEIPHGADDGISNFFKDGDTYPDWPADLNESPGELQWWMNAVDSIKAFGNEYYKKQDYKMALRKYRKALRYLDICWEKEGIDEELSLSLRKTKSQVFTNSSACKLKLGDLKGALLDTEFAMRDGDNNVKALFRQGQAYMALNDIDAAVESFKKALVLEPNDAGIKKELSAARKKIADRRDLEKKAYSKIEGVKLITIANTNVKD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1970 374 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Acco01g1970 374 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Acco01g1970 374 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Acco01g1970 374 SUPERFAMILY Cyclophilin-like 3 175 IPR029000 -
Acco01g1970 374 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Acco01g1970 374 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
Acco01g1970 374 FunFam peptidyl-prolyl cis-trans isomerase D 210 360 - -
Acco01g1970 374 Gene3D - 1 178 IPR029000 -
Acco01g1970 374 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Acco01g1970 374 CDD cyclophilin_ABH_like 4 171 - -
Acco01g1970 374 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Acco01g1970 374 SMART tpr_5 298 331 IPR019734 GO:0005515
Acco01g1970 374 SMART tpr_5 212 245 IPR019734 GO:0005515
Acco01g1970 374 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Acco01g1970 374 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Acco01g1970 374 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Acco01g1970 374 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Acco01g1970 374 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Acco01g1970 374 Gene3D Tetratricopeptide repeat domain 212 359 IPR011990 GO:0005515
Acco01g1970 374 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Acco01g1970 374 SUPERFAMILY TPR-like 208 354 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1970 Acco-ChrAcco01 35451863 35455613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1970 17 170 U-box Gene Family AT5G67530 44.516 7.65e-36 136