Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1966 ATGCTCTTCCCACTACCCACCGCTACCCTTTTCTTCCGCAGAATCTCCTTGGGTGTGAAGGATCTGAAAATGGGTTCGGTTCCTCCAGAACTGAGCTTGGATTTGAGGCCCACTTTCGTTCCCAAGACGATCAGTGATTTTCTCTACGAGGTTTCCGCGATCGGAAACAACGCCGACAAGTTGTCGAGGTTCGATGAGTTTCTCAAGAGACTGGAGGAGGAAATGATGAAGATCGACGTTTTTAAGCGTGAGCTTCCTCTCTGCCTGCTCCTCTTGAATGATGCAATCTTGACTCTGAGGGAGGAATCAGCAAAACTCAGGACATCAATTTCTCTGCCAGTGCTTGAAGAATTTATTCCCTTGACGAAAAAATGTGACCAGAAAAAGGATGATAAGAAAGAAAAGGAATGCATGGATAAGAAGAATTGGATGAGTTCTGTTCAGCTCTGGAATACAGATAATCATCCCACTACTAACAATGCTTATGACCAAAGGCAACACCGTGAATTAGAAACCAAGAAATGCGAAGACGAAGGACAATCTGTACCTGAGGACCCATTTCAATCTAGTAGAAAAAGTGATGATGGGTGCAGGGCGTTTTTGCCTTTTTCATCCTACTCTAGCATTCCTGTGACACCAGTGACAACTAAGGAAGAAAAGGACGACTCCATCAATGATCTTTCTCTTATGACTCCTGGTACTAAAAATTTGAGGGAATGTTCTGGTTCAAGTGGATCAAGAAGTGGCTCTAGCAGAGCAGTTTCTTCCTCGACTCCTAGTTTACAGCCAATTGTACCCTCAGGTCATCAACAGCCACAGAAGCAAGTTGCCAGGAAACAGAGGAGGTGCTGGTCACCACAGCTGCATCGACGATTTGTCAATGCTTTACAGCAACTCGGAGGTTCTCTAGCGGCAACCCCTAAACAAATAAGAGATCTCATGCAGGTTGATGGCCTGACCAACGACGAAGTGAAAAGTCATTTACAAAAATATCGACTTCACACTCGAAGAGTACCGGCTACCACAGCTGCAACTGCTAATCAATCTGTAGTTCTTGGAGGTTTGTGGATGTCCCAAGATCAGCAAAATGAATCATCCAAGGCTAGCAGTTCTGGCTCCGGTTCTCCTCAAGGTCCCCTCCAGTTAGCAGCATCCGGTGGAGGGATGTCTCGAACGGAAGGTGACAGCATGGACGATGATGAAGGTGAAAAATCAGAGTGTTTTAGCTGGAAAAGTCACGCTCACAGACCTGGAAAAGATGTATAG 1266 0.4566 MLFPLPTATLFFRRISLGVKDLKMGSVPPELSLDLRPTFVPKTISDFLYEVSAIGNNADKLSRFDEFLKRLEEEMMKIDVFKRELPLCLLLLNDAILTLREESAKLRTSISLPVLEEFIPLTKKCDQKKDDKKEKECMDKKNWMSSVQLWNTDNHPTTNNAYDQRQHRELETKKCEDEGQSVPEDPFQSSRKSDDGCRAFLPFSSYSSIPVTPVTTKEEKDDSINDLSLMTPGTKNLRECSGSSGSRSGSSRAVSSSTPSLQPIVPSGHQQPQKQVARKQRRCWSPQLHRRFVNALQQLGGSLAATPKQIRDLMQVDGLTNDEVKSHLQKYRLHTRRVPATTAATANQSVVLGGLWMSQDQQNESSKASSSGSGSPQGPLQLAASGGGMSRTEGDSMDDDEGEKSECFSWKSHAHRPGKDV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1966 421 MobiDBLite consensus disorder prediction 360 421 - -
Acco01g1966 421 MobiDBLite consensus disorder prediction 212 282 - -
Acco01g1966 421 Gene3D - 278 336 - -
Acco01g1966 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 278 336 IPR017930 -
Acco01g1966 421 NCBIfam myb-like DNA-binding domain, SHAQKYF class 279 334 IPR006447 GO:0003677
Acco01g1966 421 FunFam Myb family transcription factor 278 336 - -
Acco01g1966 421 SUPERFAMILY Homeodomain-like 277 337 IPR009057 -
Acco01g1966 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 31 411 IPR044787 GO:0003700|GO:0006355
Acco01g1966 421 MobiDBLite consensus disorder prediction 168 194 - -
Acco01g1966 421 Pfam Myb-like DNA-binding domain 281 332 IPR001005 -
Acco01g1966 421 MobiDBLite consensus disorder prediction 360 380 - -
Acco01g1966 421 MobiDBLite consensus disorder prediction 227 280 - -
Acco01g1966 421 MobiDBLite consensus disorder prediction 393 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1966 Acco-ChrAcco01 35394194 35396536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1966 30 357 G2-like Transcription Factor Family AT2G03500 37.960 4.04e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Acco01g1966 Myb_DNA-binding 8.3e-06 CL0123