Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1950 ATGCCGCGTCCTTGTTTTCACAAGCTTATTCTTCCATCCACCGTCCAAGCCGGCCAACTGAGGGTTCCAGATTATTTTTTGAGGAAGTTTGGGGGGGAGCTCTCTACAATTGCCACCCTCAGTGTTCCTGATGGCAGTGTCTGGCGTATTAGTATCAAAACGGCAGACAACAAATTTTGGCTCCATGATGGTTGGAAGGAGTTTGTTCAACGTTACTCCATTGGTGTTGGATGCTTTTTGGTGTTCAGATATGAAGGGAATTCATCTTTCAATGTTCATATTTTCAATTTGGCTGCTTCTGAGATAAACTATCAATTAGCCAATCGAAATAGTGATGAGCGGCCTTACTTTTCCAACCAACCTATTTTTGATGAAATGGAAGATGAAGATTCCATTGAGTTCTTTGATTCAACACCTTCCCCTGGCGCATTTAATAACAAGGTTATTGCTGGGTCTGCAGATCAATTGACACCTGGCAAGAATTATACTCCTTCACCATTGCAGAATTTCTTTAATGGGTCTAAACTTAATAGCATAAACTGGGGAGACACTATTTCTTCAAAGGGTGCCAATTCACAGAACAATCAATTGACCAGAGATAAAGGTGTTCAGTTCAATGCAGCCGAGTTTAAAAGATCTACTGAAGAGTTGAAATTGCGAGCCTCCAATAATGAAATGCAGAGAGTTAAAAAAACTGTAAGAAAAAGGCGGAAATCTGATCCTGATGGTGAAGAATCCTCTCCTCATCATGAAGAGGAGGTAGAAATGCGTTTTAGGTTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAAAGGGCAGTTAATGCTGCTAAAGCATATGAACCGCCTAATCCTTTCTGCAGGGTTGTCCTGCGGCCGTCCTATCTGTATAGGGGATGCATTATGTATTTGCCATCTGGCTTTGCAGAAAAGCATCTGAATGGGGTTTCAGGTTTCATCAAACTCCAGATTACTGAGGGAAGACAGTGGCCGGTTCGCTGTCTTTATAGAGTGGGTAGAGCAAAGTTAAGCCAGGGGTGGTTTGAATTCGCCCAAGATAACAACCTCAGGGAAGGTGATGTCTGTGTTTTTGAGCTGCTTAGAATGAGGGAAGTAGTGCTGAAAGTTACTATGTTCCGAGTCCTTGAAGAAGAGGTGGGATTGTTGGAACCTCCCATGCACCAAAGCCAAAGCATGAGCCCAACCGCCAAACTGTTGCACAATCCCTTGCAGCGAGACGTGAGCCCCATGAAAATTATTAGGAATCAGTAG 1290 0.4302 MPRPCFHKLILPSTVQAGQLRVPDYFLRKFGGELSTIATLSVPDGSVWRISIKTADNKFWLHDGWKEFVQRYSIGVGCFLVFRYEGNSSFNVHIFNLAASEINYQLANRNSDERPYFSNQPIFDEMEDEDSIEFFDSTPSPGAFNNKVIAGSADQLTPGKNYTPSPLQNFFNGSKLNSINWGDTISSKGANSQNNQLTRDKGVQFNAAEFKRSTEELKLRASNNEMQRVKKTVRKRRKSDPDGEESSPHHEEEVEMRFRFYESASARKRTVTAEERERAVNAAKAYEPPNPFCRVVLRPSYLYRGCIMYLPSGFAEKHLNGVSGFIKLQITEGRQWPVRCLYRVGRAKLSQGWFEFAQDNNLREGDVCVFELLRMREVVLKVTMFRVLEEEVGLLEPPMHQSQSMSPTAKLLHNPLQRDVSPMKIIRNQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1950 429 SMART B3_2 6 98 IPR003340 GO:0003677
Acco01g1950 429 SMART B3_2 293 388 IPR003340 GO:0003677
Acco01g1950 429 SUPERFAMILY DNA-binding pseudobarrel domain 286 386 IPR015300 -
Acco01g1950 429 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Acco01g1950 429 MobiDBLite consensus disorder prediction 236 254 - -
Acco01g1950 429 PANTHER B3 DOMAIN-CONTAINING 3 376 - -
Acco01g1950 429 MobiDBLite consensus disorder prediction 219 254 - -
Acco01g1950 429 CDD B3_DNA 4 96 IPR003340 GO:0003677
Acco01g1950 429 ProSiteProfiles B3 DNA-binding domain profile. 293 388 IPR003340 GO:0003677
Acco01g1950 429 CDD B3_DNA 291 386 IPR003340 GO:0003677
Acco01g1950 429 Gene3D - 1 98 IPR015300 -
Acco01g1950 429 Gene3D - 270 390 IPR015300 -
Acco01g1950 429 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Acco01g1950 429 Pfam B3 DNA binding domain 8 96 IPR003340 GO:0003677
Acco01g1950 429 Pfam B3 DNA binding domain 296 386 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1950 Acco-ChrAcco01 35209086 35212807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1950 1 393 B3 DNA Binding Superfamily AT3G18990 50.127 5.28e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco01g1950 B3 3.8e-17 CL0405