Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1949 ATGGACGAGGGAGCAAATCGCCGGCGGCGATCAAACTTGCCGAAGGGGAAACCGACGCACTTCTTCAAGATAATTCTTCCTACCATGACTCTTGACAAAAAATTGAGAGTTCCTAAGACGTTTGTGAATCATCACGGGGATGATTTCTCTCCCATTATTACTTTACACGATCCTAATTCTCGAGAATGGAAAATTGGCTTGGAGAAGATTGAAGAAGATGATGACCTTTGTTTCTCAGAAGGTTGGGAAAACTTCATGGAATACTATTCCATCACCGAAGTACACTTTCTGGTTTTCAGATATGACGGAGATTCAAAATTCCAGGTTCTAATATTTGACATGACTGGATCAGAAATTCAATACCCTTGCCAGAATTCAAGCCCCGAGAGAAACCCGGTTTCCTCATCGGGATCACCAAAGAGAAACGGCCATGTTCATCATCAGAGTCAAAATCATAATGATAATAATGACGGCGGTGGTGGTGATGAAGGCGGGTGCGGCGGCCATCATTTGAGTCAAAATTATAATGATAATGGTGGTGATGCTGATGATGAAGGCGGCGGCGGCGGCGATCATCATCAGAGTCAAAATCAGAATGACAGTGGTGGGAAAAACCAGGTTGCCTTATCAGGATCACCAAAGGGCAACAACCATGTTCATCATCAGAATGAAAATCATGATGATGATAATGGTGCCGGTGGTGGCGATCATCAAAATCTAAATGATAATGGTGGTGCTGGTGGTGGGGGAAACCAGGTTGCCTCATCAGAATCATCGAAGAGCGATGGTCATGATCATCATTGGAGTCAAAATTATAATGATGATGATGTTGGTGGTAGTGGTGAGGGCGGCGGCAGCCGCCATTGCCGTGGCTGGGGAGGCGACAGCTATCACTTTACTGAAGAATATTTTCCTGATGATGAGGATGATTCTACTCATGATGCACATAAAGAAGATAATTTCTACTATAGCATTTCTTCATCTAAATCCACCTCTACTTCTCCATCTAAATCCACTTCACCAGCAACAACAAAAAGACGAGGCTTCACCAAATTCATAGATCAACCATCAAGAAGAGAAAGAAGAAAATATAATTCTCCTCCTCCTTCCTCAAAAAGAAAGAGGCATGAACATAGTAGTGACAGTGAAAGTGATGAAGGTTCAAATAATAGCAGAAGAAGAAAAAGAAGAAGACGATCGATGGAAGAAAGACGCAGAGGCAGAGAAAAGAAATCAAACCACCAAGTGGAATGGCTTCGCAAACAAACATTGATATCAAAATCATACAAAAAGAGACACATAACAGAAAGAGCAAGAACCAAGGTTATTGAAGCTGCAGACAGCTACAAACCAGAGTTTCCTTCTTTCAGGGTAGTCTTGAGGCCTCACAACCTATACAACAGTATAGTGTATGTGCCAGCAAGATTTGCAGTGAAGTATTTGGGAGAAGGGTCAGGGAAGATAAGATTGGAGAACGAGAAGGGAAAACAGTGGGAAGCTAGATGCTTACACAAGAATGGATCAGGCAATGGCATGAGCATTGGCGAAGGGTGGGGTAAGTTTAAGATGGACAATGAGGTTAAGGAAGGAGATGTATGTGTGTTCGAACTTGTGCACAGAAGAGACATTGTGTTGAGAGTTCAGATATTTCGCGTCAGACAATATGCAGATCGCTGA 1677 0.4281 MDEGANRRRRSNLPKGKPTHFFKIILPTMTLDKKLRVPKTFVNHHGDDFSPIITLHDPNSREWKIGLEKIEEDDDLCFSEGWENFMEYYSITEVHFLVFRYDGDSKFQVLIFDMTGSEIQYPCQNSSPERNPVSSSGSPKRNGHVHHQSQNHNDNNDGGGGDEGGCGGHHLSQNYNDNGGDADDEGGGGGDHHQSQNQNDSGGKNQVALSGSPKGNNHVHHQNENHDDDNGAGGGDHQNLNDNGGAGGGGNQVASSESSKSDGHDHHWSQNYNDDDVGGSGEGGGSRHCRGWGGDSYHFTEEYFPDDEDDSTHDAHKEDNFYYSISSSKSTSTSPSKSTSPATTKRRGFTKFIDQPSRRERRKYNSPPPSSKRKRHEHSSDSESDEGSNNSRRRKRRRRSMEERRRGREKKSNHQVEWLRKQTLISKSYKKRHITERARTKVIEAADSYKPEFPSFRVVLRPHNLYNSIVYVPARFAVKYLGEGSGKIRLENEKGKQWEARCLHKNGSGNGMSIGEGWGKFKMDNEVKEGDVCVFELVHRRDIVLRVQIFRVRQYADR 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1949 558 MobiDBLite consensus disorder prediction 121 415 - -
Acco01g1949 558 MobiDBLite consensus disorder prediction 321 346 - -
Acco01g1949 558 MobiDBLite consensus disorder prediction 191 218 - -
Acco01g1949 558 ProSiteProfiles B3 DNA-binding domain profile. 455 553 IPR003340 GO:0003677
Acco01g1949 558 MobiDBLite consensus disorder prediction 121 144 - -
Acco01g1949 558 Pfam B3 DNA binding domain 458 552 IPR003340 GO:0003677
Acco01g1949 558 Pfam B3 DNA binding domain 21 113 IPR003340 GO:0003677
Acco01g1949 558 SMART B3_2 456 553 IPR003340 GO:0003677
Acco01g1949 558 SMART B3_2 21 115 IPR003340 GO:0003677
Acco01g1949 558 MobiDBLite consensus disorder prediction 351 391 - -
Acco01g1949 558 CDD B3_DNA 20 113 IPR003340 GO:0003677
Acco01g1949 558 ProSiteProfiles B3 DNA-binding domain profile. 20 115 IPR003340 GO:0003677
Acco01g1949 558 SUPERFAMILY DNA-binding pseudobarrel domain 16 114 IPR015300 -
Acco01g1949 558 Gene3D - 13 116 IPR015300 -
Acco01g1949 558 MobiDBLite consensus disorder prediction 244 258 - -
Acco01g1949 558 Gene3D - 433 556 IPR015300 -
Acco01g1949 558 PANTHER B3 DOMAIN-CONTAINING 15 547 - -
Acco01g1949 558 MobiDBLite consensus disorder prediction 219 233 - -
Acco01g1949 558 SUPERFAMILY DNA-binding pseudobarrel domain 449 551 IPR015300 -
Acco01g1949 558 CDD B3_DNA 454 551 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1949 Acco-ChrAcco01 35201614 35203941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1949 426 556 REM Transcription Factor Family AT1G49480 46.212 2.07e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco01g1949 B3 1.9e-19 CL0405