Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1933 ATGATCATTCTCATGATGATGATGATTCCACCGTCGTGGTCGTCGTCTTCTTCTTCAGCTCCTTCTCAGCCACCCCATCAACTTCGCTTCCACCATTTGGCCCCATCTCCTTCTCCGGCACCGGTCCCGTCTCCGGCCATCCCTGCCCCGACTCTGCTTCCGGTACCCGTCGGCAAAGAAGTGCCCTCAAAGCTGTCGGTTAACTTCAGTCCACCTCTGATCGCAATGGTGGTAGTTGTTGCCGCCGCCTTCCTCATCGTCACCTATTCCCGCCTCATCTCCCGCCGCCTCGTGCCTCCGATAATACGCTTCATGCGACGGTGGCGCCGCCGTAGGCGACGTTCCTACCTCCCGTCCTCCTCCGGCGACCTCGACTCACTTCCTTATGATTCTCCTTTTGAGCCAATTGAAGGCCCTTACATGTTTTCCCCTTATGGCCTCGACGAGTCCATCATCAAGACCATACCTTTTTACCTGTACAGTACCAAATCCAAGGATCAATTCGAAGAGTCTCGACGCGATTGCACTGTTTGTTTATTAGAGTTCGAAGATGATGAGTACGTGCGAACGCTGCCGTTTTGTTCTCACACTTTTCACCTCGATTGTATCGACGTTTGGCTCAGGTCGCACGCCAATTGCCCACTCTGCCGCGCCGGAGTTCTGTGCACCGAGTCCCCATTCACGCCAATGATGGCGGCGAGGATTCGGCCGAGCCTTGACGACGATACGATTTTGCATAGACTAAGTATGGACCCTCTGGCCGAAGCTCCACCACCGGGGGCTCATTCTCTGGTGTCGGAGATCACTCCGTGCAACGAAGATCAATCGCCGAGAATGATCCACGCGAATCCGGAGGACGATCGATTCAACGGCGGTCGTGATTTCCTCCTGAAGCGGTCCTACTCGTTCGGATTCGAACGAAGCTTGGCGTCGGAGAGAATGGTGATGGAGCCGGCGACGGCGTCGCCGTGGCGGTACCACCGAAGGGAAAGCAGCAGCAGCTTCTGGACCAAAAGGCCATCACCGTTTGGATCGTTGGGAAAGTCGAGAGTGTTCTCGTTCAGATACTACAGAGGGATGAAGTCGCCGTTCTTCCGCAGACGAGGGTTCTTCCCTCTGTCGGAGTCAAGTATGAGGTTATACAACGGAGGAGGAGGAGGAGGAAGCTCGTCTCGGAGAAGCAAGTCAATAGCAAGCCCGATGTTCCTGAGGTCGTCGGCGGCGCTAGCGGCGGTGGGAGCAGCAGCTTTCTCGTCGAGCCGGCTGAGGTGCGGCGATCCGGAGGCATTGCTGTCACCGGAGAGATACAGCAGGAGATAA 1320 0.5614 MIILMMMMIPPSWSSSSSSAPSQPPHQLRFHHLAPSPSPAPVPSPAIPAPTLLPVPVGKEVPSKLSVNFSPPLIAMVVVVAAAFLIVTYSRLISRRLVPPIIRFMRRWRRRRRRSYLPSSSGDLDSLPYDSPFEPIEGPYMFSPYGLDESIIKTIPFYLYSTKSKDQFEESRRDCTVCLLEFEDDEYVRTLPFCSHTFHLDCIDVWLRSHANCPLCRAGVLCTESPFTPMMAARIRPSLDDDTILHRLSMDPLAEAPPPGAHSLVSEITPCNEDQSPRMIHANPEDDRFNGGRDFLLKRSYSFGFERSLASERMVMEPATASPWRYHRRESSSSFWTKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSMRLYNGGGGGGSSSRRSKSIASPMFLRSSAALAAVGAAAFSSSRLRCGDPEALLSPERYSRR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1933 439 SUPERFAMILY RING/U-box 166 222 - -
Acco01g1933 439 PANTHER RING-H2 FINGER PROTEIN ATL16 62 240 IPR044600 GO:0016567|GO:0016740
Acco01g1933 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 221 IPR013083 -
Acco01g1933 439 Pfam Ring finger domain 174 217 IPR001841 -
Acco01g1933 439 SMART ring_2 175 216 IPR001841 -
Acco01g1933 439 ProSiteProfiles Zinc finger RING-type profile. 175 217 IPR001841 -
Acco01g1933 439 FunFam RING-H2 finger protein ATL65 140 221 - -
Acco01g1933 439 MobiDBLite consensus disorder prediction 13 42 - -
Acco01g1933 439 CDD RING-H2_EL5-like 174 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1933 Acco-ChrAcco01 35009016 35010335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1933 57 439 C3H Transcription Factor Family AT3G18930 51.202 1.62e-95 291