Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1898 ATGCAGGGACTTTTGAGAGGTGAAATGATGGAAACTCCAAATAGATCTATATCAACAGGGTCTTCAGACACACATGAACGGAAGGACAGAGATATAACTGATTCAATTTCAAACGCTGCCCTGCCTTCATGTCCTTTAAACCAGCAACCGTCTAGTTCCTTGGATGGCCCAGTGGCTATACTTTGGGATATTGAAAGTTGTCCTGTCCCAAGTGATGTGCGCCCTGAAGATGTTGCTGGGAATGTAACAATGGCTTTGCAGTTGCATCCAATAATTAAAGGAGCTATTGTGATGTTTTCTGCCTATGGGGATTTCAATAATTTCCCCAAGCGACTCAGAGCAGGTTGCCAAAGAACTGGTGTTAAACTTACTGATGTTCCCAGTGGGAGAAAAAATGCTGCTGACAAAGCTATCTTGATTGACATGTTCTTGTTTGCCCTTGACAACCAGCCGCCTTCTTCTATAATGCTGATATCCAGAGATTTTGATTTTGCTCCTGCAGTTCATGTTCTTGGTCAACGGGGATATACTATCATTCTTGTCATCCCTGCTCAGGTGGGCATGTCAACTGCCTTTAGCAATGCGGGTAAATTTGTCTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGCTTTGTATCTTCCTCAAAGGCTCTAGTGCCACCTCATGTTGTTCCAACTGAGGTTGTTGCTGATCTGATGGGGTGCCATATCAATGGCGACTTTGATGGAAAAAATGAAGAAGCTATTGTTTATGGAGGAGGGATCTCACAGAACTACCATATATCTAAGTGTTGCTCATTTGTGTCACAATCTCAGCCTGAATACAAAAGCGATAAATTGAATGCTTCACGCTTTCCAACGGCTTTGAGGTCGCGTAGCCTTCCATCTCCTCTGAACAATGTTTCAGGAGGATCTATGGCCTCTTCTAGTGACCAAAATGAATGCCCATCGTGGCTAAAACCTGGGGATTTGAATGATGTAAAGTGCCAGCTGGTAGAGTTGCTAGAATTTTCTGGAGGTTGTTTGCTTCTAGCTCAGGTTCTACCGGAGTATCAGAAATATTTTGGGAGGTCTTTCTCTCCATCTAGATATGGGGTACGCAAATTAGTGAGCCTTTTCAAGAAACTGGGTGATCCATTTTATGTGGAAGGGAAAGGGCCTCGGGTATTTGTATATCTCCAAAACCAGAAAGTGTGCCCTTTGTCTCAGGTGAGCAACGATAATAAAGGAAAAGGGATTCAGGAAGAGAATGCAGGAATTGTGCATGCTTGTTGCTCTGTAGATGAAGAAAGAATAGTCACAGAAGAACATGATATGAGAAGCAGCATAGAAAAGTTTCACCAAGGGAAAGCAGCCAGAAGTGAAATTCATGACCGAATTCTTGAGCAATTCAAGCATGAGCTGCAAGAGATTCTCGTAATTTATTCTTGTCCAATATTCATAGATTGTTTCGATGACATTTACCGGCTACGGTACAAGAAGCCACTGGAATACCAGAGACTGGGCGTGGACAAGTTAGAGGACTTGTTTGAGAAAGTGAGTGATGTGGTAGCATTGTATGAAGAACCAGTAAGCAAGAGGAAGTTCCTAGCTGCTGTGCATGGTTAG 1608 0.4341 MQGLLRGEMMETPNRSISTGSSDTHERKDRDITDSISNAALPSCPLNQQPSSSLDGPVAILWDIESCPVPSDVRPEDVAGNVTMALQLHPIIKGAIVMFSAYGDFNNFPKRLRAGCQRTGVKLTDVPSGRKNAADKAILIDMFLFALDNQPPSSIMLISRDFDFAPAVHVLGQRGYTIILVIPAQVGMSTAFSNAGKFVWDWPSIARGEGFVSSSKALVPPHVVPTEVVADLMGCHINGDFDGKNEEAIVYGGGISQNYHISKCCSFVSQSQPEYKSDKLNASRFPTALRSRSLPSPLNNVSGGSMASSSDQNECPSWLKPGDLNDVKCQLVELLEFSGGCLLLAQVLPEYQKYFGRSFSPSRYGVRKLVSLFKKLGDPFYVEGKGPRVFVYLQNQKVCPLSQVSNDNKGKGIQEENAGIVHACCSVDEERIVTEEHDMRSSIEKFHQGKAARSEIHDRILEQFKHELQEILVIYSCPIFIDCFDDIYRLRYKKPLEYQRLGVDKLEDLFEKVSDVVALYEEPVSKRKFLAAVHG 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1898 535 ProSiteProfiles OST-type HTH domain profile. 323 395 IPR025605 -
Acco01g1898 535 Pfam OST-HTH/LOTUS domain 324 388 IPR025605 -
Acco01g1898 535 Pfam OST-HTH/LOTUS domain 461 521 IPR025605 -
Acco01g1898 535 PANTHER LIMKAIN B LKAP 30 333 IPR024768 GO:0005777|GO:0010468
Acco01g1898 535 MobiDBLite consensus disorder prediction 1 52 - -
Acco01g1898 535 CDD LOTUS 461 517 - -
Acco01g1898 535 CDD PIN_limkain_b1_N_like 57 183 - -
Acco01g1898 535 CDD LOTUS 324 393 - -
Acco01g1898 535 MobiDBLite consensus disorder prediction 36 52 - -
Acco01g1898 535 Pfam NYN domain 57 196 IPR021139 GO:0004540
Acco01g1898 535 Gene3D - 323 392 IPR041966 -
Acco01g1898 535 Gene3D - 455 527 IPR041966 -
Acco01g1898 535 Gene3D - 85 202 - -
Acco01g1898 535 ProSiteProfiles OST-type HTH domain profile. 460 534 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1898 Acco-ChrAcco01 34622369 34623976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1898 54 208 C2H2 Transcription Factor Family AT5G61190 39.355 6.21e-25 107