Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1896 ATGTCAGTGAATCTAGAGCCGTTGGATTTAGGAGTTCCGATCCCATACCACTTCAGATGCCCCATTTCCCTCGAGCTCATGCGCGAACCCGTTACTATATCTACAGGTCAGACTTACGACCGAACCAGCATCCAGTCTTGGTTCGCCGCCGGTAACACCACCTGCCCCGTCACCAGAGCCCCCATTTCCGACTTCACTCTCATCCCAAACCACACCCTCCGCCGCCTTATCCAAGAATGGCGCGTTTCCAATCGCAATTTCGGAGTCGAACAAATCCCAAGTCCGACACGACCCGCCCACCCTTCTCTGGTTCGGACGTTATTGAATCAAGCTTCGTCGGAGACGTGCACTTCTCAGTCACGTGTCTCTGCACTGCGACGCCTCCGACGACTCGCTAGTGACTCGGAAAAGAATCGTTCTCTTATTGGATCTTACATCGTTAGCCGGATTTTACTCCGTATCCTGTTTGATACCAATTCGGATTGTTTTGAGTTGAAGCACGAGTCGCTCGCACTTTTGGTTTGTTTCTCACTTGCCGAATCTGAATGCGTCTCCATTGCAGCGGAACCGGAGAGAATCAAATATTTGTCGCGTTTGATGTTTCATTCCTCGATCGACATCCGAATTAACTCGGCTGACCTGATTGAGTCAGTCGTGAGCGGGACTCGGTCGCCGGAGCTGCATGCACAAATCAGCAATATCGATGAAATCTACGGTGGAGTGGTTGATATCTTAAAGAGTACAGTTTTGTTCCCTGGCGCTCTCAAGATTGGGATCAAGGCCTTGTTTGCTTTGTGTCTGCCGAAACAAACACGGCACAAAGCGGTGGCTGCCGGTGCTCCGGCGATCCTCATGGACCGGTTCTCTGATTTCGAGAAATGCGATGCTGAGAGAGCTCTGGTGACGATTGATTTGCTCTGTCAAATTCCGGAGGGGTTGGCCGCGTTTGCAGGGCACGCTCTGACGGTACCGCTGCTGGTGAAAACAATACTGAAGATATCGGACCGGGCGACGGAGCACGCTGCCGTAGCGCTATTGGCTGTTTGCTCAGAATCGGAGGAGTGCCGCAGGGAGGCGGTGGCGGCGCGTGTGTTGACGCCACTGCTATTGGTGGTACAGAGTGATTGTACAGAGAGGGCAAAGAGGAAGGCGAAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGATTGCGTTGGAAACTCTGACGATTTTGCATGCGGCGACCTTGTTGTACCGTTTTGA 1248 0.5248 MSVNLEPLDLGVPIPYHFRCPISLELMREPVTISTGQTYDRTSIQSWFAAGNTTCPVTRAPISDFTLIPNHTLRRLIQEWRVSNRNFGVEQIPSPTRPAHPSLVRTLLNQASSETCTSQSRVSALRRLRRLASDSEKNRSLIGSYIVSRILLRILFDTNSDCFELKHESLALLVCFSLAESECVSIAAEPERIKYLSRLMFHSSIDIRINSADLIESVVSGTRSPELHAQISNIDEIYGGVVDILKSTVLFPGALKIGIKALFALCLPKQTRHKAVAAGAPAILMDRFSDFEKCDAERALVTIDLLCQIPEGLAAFAGHALTVPLLVKTILKISDRATEHAAVALLAVCSESEECRREAVAARVLTPLLLVVQSDCTERAKRKAKMLLKLLRDSWPQDCVGNSDDFACGDLVVPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1896 415 Gene3D - 253 391 IPR011989 -
Acco01g1896 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Acco01g1896 415 SUPERFAMILY RING/U-box 12 89 - -
Acco01g1896 415 Gene3D - 87 252 IPR011989 -
Acco01g1896 415 FunFam U-box domain-containing protein 31 13 87 - -
Acco01g1896 415 SUPERFAMILY ARM repeat 103 392 IPR016024 -
Acco01g1896 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Acco01g1896 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 86 IPR013083 -
Acco01g1896 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Acco01g1896 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Acco01g1896 415 PANTHER WDSAM1 PROTEIN 14 400 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1896 Acco-ChrAcco01 34580197 34581444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1896 1 415 U-box Gene Family AT1G49780 63.033 6.87e-176 496