Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1893 ATGTCAGTGAATCTAGAGCCGTTGGATTTAGGAGTTCCGATTCCATACCACTTCAGATGCCCCATTTCCCTCGAGCTCATGCGCGAACCCGTTACTATATCCACGGGTCAGACTTACGACCGGACCAGCATCCAGTCTTGGTTCGCCGCCGGTAACACCACCTGCCCCGTCACCAGAGCCCCCATTTCCGACTTCACTCTCATCCCAAACTACACTCTCCACCGCCTTATCCAAGAATGGGGCGTTTCCAATCGCGATTTCGGAGTCGAACAGATCCCAAGTCCGATCCGACCCGCCCACCCTTCTCTGGTCCGGACGTTGTTGAATCAAGCTTCGTTGGAGATGTGCACTTCTCAGCCACGTCTCTCTGCACTGCGACGCCTCCGACGACTCGCTAGTGACTCGGAAAAGAATCGTTCTCTTATTGGATCTTACAACGTGCACCGGATTTTACTCCGTATCCTGTTTGATACCAATTCGGATTGTTTTGAGTTGAAGCACGAGTCGCTCGCACTTTTGGTTTGTTTCTCACTTGCCGAATCTGAATGCGTCTCCATCGCATCGGAACCGGAGAGAATCAAGTATTTGTCGCGTTTGATGTTTCATTCCTCGATCGACGTCCGAGTTAACTCGGCTGCCCTGATTGAATCAGTCGTGAGCGGGACACGGTCGCCGGAGCTGCAAGCACAAATCAGCAATGTCGATGAAATCTACGGTGGAGTGGTTGATATCTTGAAGAGTCCAGTTTCGTTCCCTCGCGCTCTCAAGATCGGGATCAAGGCCCTGTTTGCTTTGTGCCTGCCGAAACAAACACGGCACAAAGCGGTGGCTGCCGGTGCTCCGGCTATCCTCATGGACCGGCTCGCTGATTTCGAGAAATGCGATGCTGAGAGAGCTCTGGTGACGATTGAGTTGCTCTGTCGAATTCCGGAGGGGTTGGCCGCGTTTGCAGGGCACGCTCTGACGGTACCGCAGCTGGTGAAAACAATACTGAAGATATCGGACCGGGCGACGGAGCACGCTGCCGGAGCGCTATTGGCTGTTTGCTCGGAATCGGAGGAGTGCCGGAGGGAGGCGGTGGTCGCGCGTGTGTTGACGCCACTGCTATTGGTGGTACAGAGTGATTGTACAGAGAGGGCAAAGAGGAAGGCGAAGATGATGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGATTGCGTTGGAAACTCTGACGATTTTGCATGCGGCGAACTTGTTCTTCCGTTTTAA 1248 0.5369 MSVNLEPLDLGVPIPYHFRCPISLELMREPVTISTGQTYDRTSIQSWFAAGNTTCPVTRAPISDFTLIPNYTLHRLIQEWGVSNRDFGVEQIPSPIRPAHPSLVRTLLNQASLEMCTSQPRLSALRRLRRLASDSEKNRSLIGSYNVHRILLRILFDTNSDCFELKHESLALLVCFSLAESECVSIASEPERIKYLSRLMFHSSIDVRVNSAALIESVVSGTRSPELQAQISNVDEIYGGVVDILKSPVSFPRALKIGIKALFALCLPKQTRHKAVAAGAPAILMDRLADFEKCDAERALVTIELLCRIPEGLAAFAGHALTVPQLVKTILKISDRATEHAAGALLAVCSESEECRREAVVARVLTPLLLVVQSDCTERAKRKAKMMLKLLRDSWPQDCVGNSDDFACGELVLPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1893 415 Gene3D - 97 244 IPR011989 -
Acco01g1893 415 PANTHER WDSAM1 PROTEIN 14 400 IPR045185 GO:0061630
Acco01g1893 415 FunFam RING-type E3 ubiquitin transferase 14 85 - -
Acco01g1893 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Acco01g1893 415 SUPERFAMILY RING/U-box 12 85 - -
Acco01g1893 415 Gene3D - 245 391 IPR011989 -
Acco01g1893 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Acco01g1893 415 SUPERFAMILY ARM repeat 103 391 IPR016024 -
Acco01g1893 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Acco01g1893 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Acco01g1893 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1893 Acco-ChrAcco01 34492894 34494141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1893 1 415 U-box Gene Family AT1G49780 64.218 0.0 509