Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1890 ATGGCCTCCCCGCTCTCCCTGACTCCCTCTAGAGAAGGGAGAATCGGAGATAAAAAGCACAAACGGAGGCGTTTCTGCTTGACCCATTTGGATCCTCGGGATCCTCTTCAGGGAATTGGGTGGGGTATTGAATTTAACTATTGTCAGATTTTGAGGAGTAAGCGGGGAAAATTCTATTCCTCTCCAACAGAAATGGCTCAAATGGTTTGTGGTTCTTGTCGTCGACTTCTATCATATCAACGAGGTGCCAAACATGTCAAGTGTTCTTGCTGTCAGACAGTAAACCTTGTGTTAGAAGCTGATCAGGTTGGGCAAGTCAAGTGTGGGGGCTGTGCAGTTCTGCTCATGTATCCATATGGCGCTTCACAAGTTAAGTGTAGTTCCTGCCAGATTGTGACAAAAATTGAGGAACACAACAAGCGGCCCCCATGGTCTGTACAGCAACAGCAAGGGAAACCTTCTCCTCCCAAATCAATTTCTTAG 483 0.4679 MASPLSLTPSREGRIGDKKHKRRRFCLTHLDPRDPLQGIGWGIEFNYCQILRSKRGKFYSSPTEMAQMVCGSCRRLLSYQRGAKHVKCSCCQTVNLVLEADQVGQVKCGGCAVLLMYPYGASQVKCSSCQIVTKIEEHNKRPPWSVQQQQGKPSPPKSIS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1890 160 MobiDBLite consensus disorder prediction 140 160 - -
Acco01g1890 160 NCBIfam zinc finger domain, LSD1 subclass 67 97 IPR005735 -
Acco01g1890 160 NCBIfam zinc finger domain, LSD1 subclass 105 135 IPR005735 -
Acco01g1890 160 MobiDBLite consensus disorder prediction 142 160 - -
Acco01g1890 160 Pfam LSD1 zinc finger 70 94 IPR005735 -
Acco01g1890 160 Pfam LSD1 zinc finger 108 132 IPR005735 -
Acco01g1890 160 PANTHER PROTEIN LSD1 61 151 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1890 Acco-ChrAcco01 34473427 34476764 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Acco01g1890 zf-LSD1 9.5e-11 No_clan