Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1888 ATGGCTCAAATGGTTTGTGGTTCTTGTCGTCGACTTCTATCATATCAACGAGGTGCCAAACATGTCAAGTGTTCTTGCTGTCAGACAGTAAACCTTGTGTTAGAAGCTGATCAGGTTGGGCAAGTCAAGTGTGGGGGCTGTGCAGTTCTGCTCATGTATCCATATGGCGCTTCACAAGTTAAGTGTAGTTCCTGCCAGATTGTGACAAAAATTGAGGAACACAACAAGCGGCCCCCATGGTCTGTACAGCAACAGCAAGGGAAACCTTCTCCTCCCAAATCAATTTCTTAG 291 0.4605 MAQMVCGSCRRLLSYQRGAKHVKCSCCQTVNLVLEADQVGQVKCGGCAVLLMYPYGASQVKCSSCQIVTKIEEHNKRPPWSVQQQQGKPSPPKSIS 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1888 96 MobiDBLite consensus disorder prediction 75 96 - -
Acco01g1888 96 MobiDBLite consensus disorder prediction 78 96 - -
Acco01g1888 96 Pfam LSD1 zinc finger 44 68 IPR005735 -
Acco01g1888 96 Pfam LSD1 zinc finger 6 30 IPR005735 -
Acco01g1888 96 PANTHER PROTEIN LSD1 1 87 IPR040319 -
Acco01g1888 96 NCBIfam zinc finger domain, LSD1 subclass 3 33 IPR005735 -
Acco01g1888 96 NCBIfam zinc finger domain, LSD1 subclass 41 71 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1888 Acco-ChrAcco01 34453601 34455364 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Acco01g1888 zf-LSD1 4.1e-11 No_clan