Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1887 ATGTCTGCAGATAGAGAACAAGACAGGAAGAAGCACATAATGGAGAAGCTAGCCATGAACCCTCCACCTCAAAACCATAATAATGACACTTCAAATACAGGAGGGAAGGAAAAGGGTGTTGTTACTAATAGTACTGATGAAATGATGGATACTGCTGAGAAGGAGAGGCGTAAGAAAATCAAATCTTTGTTTGCTGAACTTCATGCTATGCTCCCTCATGTTCCCCTCCAGGCTGACAAAGTGACAGTAGTGGATGAAACAATGAACTACATAAGAATATTGGAGGAAACTTTGAAAGACCTTGAAAAGAAGAAGCTTCAACGACTTCACTCTAATGTTGTTGGGAATCCCACTGCTACTTCAAGAGAGGCCTTCATAGCCGAACATGTAGCTTCCTCCTCATCCACTTCACGTCCTCCACATGATAATCAAAACCCAGAAGTGAAGTTCCAAACTTGGACTTCTCCGAATGTGGCAGTCAACATTTGTGGCCAACAAGCTCAATTCAGTGTTTGCTCCGACAAGAACAATCGCTGCCTCTTCACCAACATCTGCTCTGTTCTCGAAAAGTACAAGATTGATGTTTTGTCTGCCTACATCTCATGTGACAACAATTATTGCAGGTTTTTTATGTTTCAGGCTCAAATGAGCAAAGATTTGAATCAGCCTCCAACTTCATTATCAGCAGAGGAAACATTCAAGCAAGCTGCTACTGAAATTATTCAGAGTCTCTCTTGA 738 0.416 MSADREQDRKKHIMEKLAMNPPPQNHNNDTSNTGGKEKGVVTNSTDEMMDTAEKERRKKIKSLFAELHAMLPHVPLQADKVTVVDETMNYIRILEETLKDLEKKKLQRLHSNVVGNPTATSREAFIAEHVASSSSTSRPPHDNQNPEVKFQTWTSPNVAVNICGQQAQFSVCSDKNNRCLFTNICSVLEKYKIDVLSAYISCDNNYCRFFMFQAQMSKDLNQPPTSLSAEETFKQAATEIIQSLS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1887 245 Gene3D - 49 114 IPR036638 GO:0046983
Acco01g1887 245 MobiDBLite consensus disorder prediction 21 47 - -
Acco01g1887 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 112 IPR036638 GO:0046983
Acco01g1887 245 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 25 241 IPR044278 GO:0003700|GO:0006355|GO:0009960
Acco01g1887 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Acco01g1887 245 MobiDBLite consensus disorder prediction 1 16 - -
Acco01g1887 245 Coils Coil 84 104 - -
Acco01g1887 245 MobiDBLite consensus disorder prediction 129 148 - -
Acco01g1887 245 SMART finulus 50 100 IPR011598 GO:0046983
Acco01g1887 245 MobiDBLite consensus disorder prediction 1 50 - -
Acco01g1887 245 CDD bHLH_AtbHLH_like 52 102 IPR045239 -
Acco01g1887 245 Pfam Helix-loop-helix DNA-binding domain 52 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1887 Acco-ChrAcco01 34444337 34445703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1887 47 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.746 2.56e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g1887 HLH 1.9e-06 No_clan