Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1886 ATGAAGTGTAGATTCACATGTTTGCTAGTCATTCATGTCGATCCACATGCAAGAAAATTGTCCCGAGGAGGGTTCTTTCAGTATCAACATCGTCTCACAGATCTATCTACAGCCATGTCTGCAGATAGAGAGAAAGAGAGGAAAAACCTGTCCAATTATTCAGAGAAAAACATGGAGAAGCTAGCCATGAACCCTCCACCTCAAAAGCATAACAATAACACTTCAAACACAAGAGGGAAGGAGAAGGGTGGTGTTACTAATAGTACTGATGAAATGAATAATGCTGAGAAGGAGAGGCGTCAGAAAATCAAATCCTTGTTTGCTCACCTTCATGCTATGCTCCCTCATGTTTCCCCTCAGGCGGACAAAGTTCTATATGTTTCAGGCTCAATCCCTTCGCTATCCATCCTGGCCTTCCAACGTTATAAGTATCTCTCCCTATTCACAACTCCTTCTCATAAGCAAACCACAATGTCTTCTTCTGATGAGCTCTCAAATTCATCAGATGTCACTGTGGAGAATTCCTTGAGAGAAATCAGCTCAGTCAATCGTCGTCGTAAATCTCATACCTCATTAGAGACAAATCGAAGGAAGAAGATGAGACTCTCTCTCAGAGAACTTCAAGATCTGGTCCCTTCTTTGAATCAGATTCAGGCAGACAAGGCAACCATTGTTGAAGAAACTATCAAGTACATTAAAACCCTAAAACTCATTCTTGAAAATCTGGAGAAAATGGAGAGAGAAAGACTCCTCCGATCTGCAGTCATGGCTACTTCACCAGTAGCACAAAACCCAATAGGGTTTCAAACTTGGGTTTTTCCAAATGTGGCAGTGTACATTTGTGGCGAAAAAGCTCAGTTTAGTATGTGCTTTCCTAAGAAGGAAGACCTCTACGGTGAAATCTGTTGTGTTCTTCACAAGTATAATATTCAGATTTTAGTTGCCAGCATCTCAACTAATAATTACAGAAGCACGTATAAGATTCATGCACGTGCAAAAAATAGGGAGAATTCGGAAGGAAGTTCAGAGGCATGTTCATTGGAGGAGACATTCAAGAAAGCTGCAAGAGACATTTATCTTCTCTCTCCTATGTGA 1095 0.41 MKCRFTCLLVIHVDPHARKLSRGGFFQYQHRLTDLSTAMSADREKERKNLSNYSEKNMEKLAMNPPPQKHNNNTSNTRGKEKGGVTNSTDEMNNAEKERRQKIKSLFAHLHAMLPHVSPQADKVLYVSGSIPSLSILAFQRYKYLSLFTTPSHKQTTMSSSDELSNSSDVTVENSLREISSVNRRRKSHTSLETNRRKKMRLSLRELQDLVPSLNQIQADKATIVEETIKYIKTLKLILENLEKMERERLLRSAVMATSPVAQNPIGFQTWVFPNVAVYICGEKAQFSMCFPKKEDLYGEICCVLHKYNIQILVASISTNNYRSTYKIHARAKNRENSEGSSEACSLEETFKKAARDIYLLSPM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1886 364 MobiDBLite consensus disorder prediction 179 196 - -
Acco01g1886 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 252 IPR036638 GO:0046983
Acco01g1886 364 MobiDBLite consensus disorder prediction 153 196 - -
Acco01g1886 364 MobiDBLite consensus disorder prediction 58 97 - -
Acco01g1886 364 SMART finulus 93 143 IPR011598 GO:0046983
Acco01g1886 364 SMART finulus 190 241 IPR011598 GO:0046983
Acco01g1886 364 Gene3D - 174 252 IPR036638 GO:0046983
Acco01g1886 364 CDD bHLH_AtbHLH_like 189 243 IPR045239 -
Acco01g1886 364 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 40 127 IPR044278 GO:0003700|GO:0006355|GO:0009960
Acco01g1886 364 Pfam Helix-loop-helix DNA-binding domain 185 235 IPR011598 GO:0046983
Acco01g1886 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 235 IPR011598 GO:0046983
Acco01g1886 364 MobiDBLite consensus disorder prediction 153 178 - -
Acco01g1886 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 145 IPR036638 GO:0046983
Acco01g1886 364 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1886 Acco-ChrAcco01 34435726 34442601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1886 189 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 26.407 1.56e-19 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g1886 HLH 9.8e-09 No_clan