Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1885 ATGCAAGGTAACAGAAGGACTCTTGGGTCCTTTCCAGCAATTGTAAGTATGATGCAGGAGCCTAGTTCCAGTGGCACTGATATAAATCAGCAGACTTCCTTGAATCACATGCAAAATCCAGTTGATGCTCGGTTGTCAGATTTTCTGGGATCCTCCAGTGACACTGCATGTTTACGCACTAGTGGTCCTAATGTTCAGAACTTTGACGGATGGAATGCTGGTGAACCTAGTTCTAGTGTGAATCTTCACAGTCAAGTCAACAGCGATGGGTTCAAACCAGAACATGGTTGGTCTTCTTCATGTAGTGCTTCTACTGAGGATGTTCTCAGACCAGAAGTACAGCAATTTGATCCAAATAATGTAACTTTCCCTGGTAGCTTGAATAACGACTTACGTGGAAATCAATCCAGAGTTCGGCCTTTCTTCTTGCAAGGTTCCAGCTCCAATCATAGAACCCAGAATGCGGCTTTGAATATGGGTTCCATTGCCCGCCCTGCTAATCATGGGAAAGGAATAGAACCTTGTAGCAGTGATAGTATTCACGATGCATATGGATTCAATAGTAAGCATACATCATTCGGTAGTGCTTCATGTGATCATATAGGAACTTCATCTGGAAGCTCTGGTTACATTGTTGGGGGAGATAATGAAAATTCAAGCTCTTCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCTCTTGAAAGTACATCTGGTCAGCTGTGTACTGGAGGAAGTTCAAGCTCTTTTTTAGAAGCTGAAAACAGTTGCTGGTCTACCGGGACTCCCAATTCTAATATTGCTTCCAGCAGTTTACATGTCTCTAGACCTTCTGAGGATATTCCTTGTACTAATCCTCCAGTAGAGCAGAACCCAAGAAATGAGATGAGGCAAATAGCTTCTGATGAATTCCCTTTGATTGGAGTTATGGGAAATGTGAACAGGCCTCTGACTCTGAGAGACTTTGATAGGAGAATGAATTATCCACAGCGACAGGAATCTAGGCATGCTAGTCATTCTTCCTCCCGCCAAACACCCACCTCTCACCCATTTAATGATTCTCTAGAATTAAGGTTAACAGCTGGAGTTACAGCAACTGACTCTGGTGCCCCTCAGTGTCAGTCACATGTTACGCACATTCCTGGTTTGCCAGGGAACACCCATCCTTTTCCTTGGAGTGGAGCTTCTAGTTCAAGAGTAGCCAGTTCATCCACTTCTTATAACTCTGTAGAAAGAGAACTTCGGGAAGAAATGAACCTGAGGATTTTTCCAAGGGACAATACAGAGCACCCAATCCTTGCACCTTCATCATCTGGACTTGACCCTACAAGTTGGCATGTGTCATCTGGCAATGTGCACAATTCTGGAATTGTACCTCCTGCACCTTGGATTGGATCCAGTTCAAGTGTCAATTCATTACCCACTCCGAGATGGGTTGTTCCCCATGAAGTTCCATCACAGAGCCAGCAAAGATTATCAGAGTTCACTCCCTGGCCCCTTTTCCCATCAATGAACTCAGTATCTGGTGTTCATAATGTTCATTCTGCCTCGTCTTCTACTTCTTCTGGTCCTCCTTCCTTTTCTCCAGACATGAGCAACCACCAATCATATCCAAGATTAGCATCATTGATGGAGAGAAGAGGTGATGAAATTCTTAGTGCACCCCACTCATTGCGGGCTTTGGCTGTTGACATTGAGGGGAGACGACGATTGATATCTGAGATTCGCCAAGTCTTAAGTGCAATGCGTAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCATATATCATGGTATGGCTGAACTGCATGATAGGCACAGGGACATGCGCCTTGATGTTGACAACATGTCTTATGAGGAATTGCTGGCACTGGAGGAGCGCATTGGAGACGTGAGCACCGGATTGAGTGAGGATACCATTATGAAGTTGATGAAACATCGGATCTTCGTGTCTGTCATGACTGAGTCTTCTACAGATCTAGAACCTTGTTGTATTTGTCAGGAGCAATATGCCGACGGGGAGGATGTAGCCTCACTGGATTGTGGGCATGAATTCCACACCAACTGCATCAAGCAGTGGCTAATGCAGAAGAACCTGTGCCCCATTTGCAAAACCACAGCCCTAGCAACTTGA 2151 0.4486 MQGNRRTLGSFPAIVSMMQEPSSSGTDINQQTSLNHMQNPVDARLSDFLGSSSDTACLRTSGPNVQNFDGWNAGEPSSSVNLHSQVNSDGFKPEHGWSSSCSASTEDVLRPEVQQFDPNNVTFPGSLNNDLRGNQSRVRPFFLQGSSSNHRTQNAALNMGSIARPANHGKGIEPCSSDSIHDAYGFNSKHTSFGSASCDHIGTSSGSSGYIVGGDNENSSSSLVNWGSSCKRKALESTSGQLCTGGSSSSFLEAENSCWSTGTPNSNIASSSLHVSRPSEDIPCTNPPVEQNPRNEMRQIASDEFPLIGVMGNVNRPLTLRDFDRRMNYPQRQESRHASHSSSRQTPTSHPFNDSLELRLTAGVTATDSGAPQCQSHVTHIPGLPGNTHPFPWSGASSSRVASSSTSYNSVERELREEMNLRIFPRDNTEHPILAPSSSGLDPTSWHVSSGNVHNSGIVPPAPWIGSSSSVNSLPTPRWVVPHEVPSQSQQRLSEFTPWPLFPSMNSVSGVHNVHSASSSTSSGPPSFSPDMSNHQSYPRLASLMERRGDEILSAPHSLRALAVDIEGRRRLISEIRQVLSAMRRGENLRAEDYMLFDPFIYHGMAELHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDTIMKLMKHRIFVSVMTESSTDLEPCCICQEQYADGEDVASLDCGHEFHTNCIKQWLMQKNLCPICKTTALAT 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1885 716 MobiDBLite consensus disorder prediction 269 293 - -
Acco01g1885 716 FunFam E3 ubiquitin-protein ligase MBR2 636 714 - -
Acco01g1885 716 SUPERFAMILY RING/U-box 652 713 - -
Acco01g1885 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 714 IPR013083 -
Acco01g1885 716 MobiDBLite consensus disorder prediction 513 536 - -
Acco01g1885 716 SMART ring_2 669 709 IPR001841 -
Acco01g1885 716 MobiDBLite consensus disorder prediction 330 354 - -
Acco01g1885 716 MobiDBLite consensus disorder prediction 340 354 - -
Acco01g1885 716 ProSiteProfiles Zinc finger RING-type profile. 669 710 IPR001841 -
Acco01g1885 716 Pfam Ring finger domain 669 710 IPR001841 -
Acco01g1885 716 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 226 714 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1885 Acco-ChrAcco01 34431486 34435444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1885 18 716 C3H Transcription Factor Family AT2G15530 37.062 8.64e-113 355