Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1880 ATGCATAGGCACCCACCTGTACACTATGAGATGGGTCAATCAGCTTCTTTGTTTTTTAGTTGTACTTTAGGTTTTCGCGGCACAACAATGGAGCAAGCGCAGAATCAAGCCATCGAGCAAGTTCAGTGCTTCGGCCGCAAGAAGACTGCCGTGGCCGTCACCTACTGCAAGCGCGGCCGTGGCCTCATTAAGATCAATGGCTGCCCTATTGAGTTGGTTCAGCCGGAGATCCTCCGATTCAAGGCATTCGAGCCAATCCTTCTCTTGGGAAAGCACCGATTTGCTGGCGTCGACATGAGAATCCGTGTCAAAGGAGGTGGTCACACCTCGCAGATTTACGCAATCAGACAGAGTATTGCCAAAGCCCTTGTTGCGTTTTACCAGAAGTACGTTGACGAGCAGAGCAAGAAGGAGATTAAAGACATCCTGGTTAGGTACGACAGAACCTTGCTGGTTGCTGATCCCAGGCGCTGCGAGCCTAAGAAGTTCGGTGGTCGTGGTGCTCGTGCAAGATTCCAGAAGTCCTACCGTTGA 534 0.5131 MHRHPPVHYEMGQSASLFFSCTLGFRGTTMEQAQNQAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGKHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1880 177 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Acco01g1880 177 FunFam 40S ribosomal protein S16 33 177 - -
Acco01g1880 177 ProSitePatterns Ribosomal protein S9 signature. 105 123 IPR020574 GO:0003735|GO:0005840|GO:0006412
Acco01g1880 177 Gene3D - 30 177 IPR014721 -
Acco01g1880 177 Pfam Ribosomal protein S9/S16 45 177 IPR000754 GO:0003735|GO:0005840|GO:0006412
Acco01g1880 177 SUPERFAMILY Ribosomal protein S5 domain 2-like 40 177 IPR020568 -
Acco01g1880 177 PANTHER RIBOSOMAL PROTEIN S9 31 174 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1880 Acco-ChrAcco01 34350058 34351785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1880 33 177 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 88.966 8.77e-94 267