Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1876 ATGGCTCAGGTCCAGGTTCCGCCTCAAAATGTGATACCGGGAGCTAACGGTGCTCCTGCAACTGGCGGGGCAAACCAGTTCGGGACGACGTCGCTCTATGTTGGAGATCTTGATGGGAACGTCACAGAATCGCAGCTGTACGATCTGTTCAGTCAAGCTGGTCGGGTTGTCTCTGTTAGGGTTTGTAGGGATTTGACCAGCCGGCGATCACTTGGTTACGGTTATGTCAATTATAATTCGGCGCCAGAAGCTGCCAGAGCAATTGATGCACTGAACTTCGCTCCTCTTAATAACAAGCCCATCCGTATTATGTATTCACATCGTGATCCTAGCATGCGAAGAAGTGGGTCTGGAAATATATTTATTAAGAATCTTGACAAGGCAATTGACCACAAAGCTTTGCATGATACCTTTTCTGCATTTGGGAATATCCTTTCCTGCAAAGTAGCCACAGATTCATCTGGCCAGTCAAAGGGATATGGCTTTGTGCAATTTGAAAATGAGGAATCTGCTCAAAAGGCCATAGAGAAGCTGAATGGCATGCTGTTGAATGATAAACAGGTATATGTGGGACCCTTTCTTCGCAAGCAAGAGAGAGAAAGTGCTGTTGACAAAACAAAATTTAACAACGTTTTTGTTAAGAATTTATCTGAGACAACCTCTGATGAAGATTTGAAGGCAATTTTTGGTGAATTCGGAACAATTACTAGTGCTGTAGTTATGAGAGATGCAGATGGGAAATCAAAGTGCTTTGGATTTGTGAACTTTGAGCATGCTGATGATGCTGCTAGGGCTGTTGATTCTCTTAATGGGAAGAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCCGAGAGGGAGCTTGAATTGAAACTTCGATTTGAGCAGACCATGAAAGAAGCTGCTGATAAATATCAAGGGGCTAACTTGTATGTTAAAAATTTAGATGATAGCATTGGTGACGATAAGCTTAGGGAGCTCTTCTCTCCATTTGGTAACATTACCTCATGCAAGGTTATGAGAGACCCCAATGGGGTAAGCCGAGGATCAGGGTTTGTGGCATTCACGAGTCCTGAAGAGGCTTCTAGAGCTCTTATGGAGATGAATGGAAAAATGGTAATAAGCAAGCCTCTATATGTTGCTTTAGCTCAACGTAAAGAAGATAGAAGAGCTAGGCTGCAGGCTCAATTTGCACAAATGCGGCCTGTTGCAATGGCACCGTCTGTAGCTCCCCGAGTGCCTATGTACCCCCCTGGTGGTCCAGGTATTGGACAACAAATATTTTATGGTCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAGCAACAGCTTGTACCTGGAATGAGGCCTGGAGGAGGTCCTATGCCAAATTTCTTTGTGCCAATGGTTCAGCAAGGGCAGCAGGGCCAGCGTCCAGGTGGGAGACGTGCAGGGGCAGTCCAACAGAACCAGCAGCCTGTTCCACTAATGCAGCAACAGATGCTTCAAAGGGGGCGTATGTACCGATATCCACCCGGTAGGGGCCTGCCTGATGCTCCCATGCCTGGGGTTGCTGGAGGCATGTTTTCTGTGCCGTATGATGTTGGTGGTGGAATGCCAATTCGTGATGCAGCTCTGCCCCAGCAAATACCTATAGGGGCTCTGGCTTCTGCTCTGGCAAATGCTTCTCCAGAGCAACAGAGGACGATGCTGGGCGAAAATCTCTACCCTCTTGTGGAACAGTTGGAGCCTGATAATGCAGCAAAAGTGACAGGCATGCTTCTGGAGATGGACCAGCCTGAGGTTCTGCACTTGCTCGAATCACCTGAGGCTTTGAAATCGAAGGTGGCTGAGGCAATTGATGTTCTGAGGAATGTTGCTCAGCAGCAACAAGCTGGTGGGGCAGCTGATCAATTGGCCGCATTAGCACTTAATGACAATCTTATTTCTTGA 1959 0.4681 MAQVQVPPQNVIPGANGAPATGGANQFGTTSLYVGDLDGNVTESQLYDLFSQAGRVVSVRVCRDLTSRRSLGYGYVNYNSAPEAARAIDALNFAPLNNKPIRIMYSHRDPSMRRSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFENEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAVDKTKFNNVFVKNLSETTSDEDLKAIFGEFGTITSAVVMRDADGKSKCFGFVNFEHADDAARAVDSLNGKKIDDKEWYVGKAQKKSERELELKLRFEQTMKEAADKYQGANLYVKNLDDSIGDDKLRELFSPFGNITSCKVMRDPNGVSRGSGFVAFTSPEEASRALMEMNGKMVISKPLYVALAQRKEDRRARLQAQFAQMRPVAMAPSVAPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQNQQPVPLMQQQMLQRGRMYRYPPGRGLPDAPMPGVAGGMFSVPYDVGGGMPIRDAALPQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQPEVLHLLESPEALKSKVAEAIDVLRNVAQQQQAGGAADQLAALALNDNLIS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1876 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Acco01g1876 652 FunFam Polyadenylate-binding protein 119 192 - -
Acco01g1876 652 FunFam Polyadenylate-binding protein 549 631 - -
Acco01g1876 652 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Acco01g1876 652 SUPERFAMILY PABC (PABP) domain 493 644 IPR036053 GO:0003723
Acco01g1876 652 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Acco01g1876 652 FunFam Polyadenylate-binding protein 199 294 - -
Acco01g1876 652 Gene3D - 119 191 IPR012677 -
Acco01g1876 652 Gene3D - 296 397 IPR012677 -
Acco01g1876 652 SMART rrm1_1 210 282 IPR000504 GO:0003723
Acco01g1876 652 SMART rrm1_1 119 191 IPR000504 GO:0003723
Acco01g1876 652 SMART rrm1_1 31 104 IPR000504 GO:0003723
Acco01g1876 652 SMART rrm1_1 313 385 IPR000504 GO:0003723
Acco01g1876 652 FunFam Polyadenylate-binding protein 11 113 - -
Acco01g1876 652 CDD RRM4_I_PABPs 311 389 - -
Acco01g1876 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Acco01g1876 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Acco01g1876 652 Gene3D - 548 632 - -
Acco01g1876 652 CDD RRM2_I_PABPs 116 192 IPR045305 -
Acco01g1876 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Acco01g1876 652 Gene3D - 194 295 IPR012677 -
Acco01g1876 652 SMART rrm2_1 119 191 IPR003954 GO:0003676
Acco01g1876 652 SMART rrm2_1 210 282 IPR003954 GO:0003676
Acco01g1876 652 SMART rrm2_1 313 385 IPR003954 GO:0003676
Acco01g1876 652 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 626 IPR006515 GO:0003723
Acco01g1876 652 FunFam Polyadenylate-binding protein 295 400 - -
Acco01g1876 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Acco01g1876 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Acco01g1876 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Acco01g1876 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Acco01g1876 652 SUPERFAMILY RNA-binding domain, RBD 209 393 IPR035979 GO:0003676
Acco01g1876 652 CDD RRM3_I_PABPs 208 287 - -
Acco01g1876 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Acco01g1876 652 Gene3D - 24 118 IPR012677 -
Acco01g1876 652 PANTHER RNA BINDING PROTEIN 29 92 - -
Acco01g1876 652 SMART poly_2 565 628 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1876 Acco-ChrAcco01 34295463 34300614 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1876 1 647 Eukaryotic Initiation Factors Gene Family AT4G34110 70.948 0.0 903