Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1784 ATGGCTTGCACAAAACTGCACCAAAACGACGCAGTTTTGGTCTTTTCTCTGACTCTCTATCTCCTCCCTTCTATATATAAAGCCTCCCCTTTGTTTTTCACTCTCATCCCTCTCTCACCACTTCTTCTTCTTCTTCTTTCTAAAATGGCTTTGCAGGCTCTGAATTCGCCTTCTGCTACTCCCAATCCTGTGTTCAAAGACGACGACCTTCACTCCCTTGAGGCTTGGACCAAGGGCAAGCGATCTAAACGACCCCGTTTTGATCACAATTCGCCTTCCACTGAGGAAGAGTACCTCGCTATCTGCCTCCTCATGCTCGCTCACGGCGGTACTGTTGACCCCAATACGACGTCGTTGTCTTCCTCCCCTGATCCTGATTCTCCCATGAAGCTCTCTCATAAGTGCTCTGTTTGTAACAAGTCCTTTCCCTCCTATCAAGCTCTCGGAGGACACAAGGCCAGCCACCGCAAGTCGTCTTCCTCCTCCGATCATCACCCTCCCGCCGACAATTCGTCCGCTTCCACCTCCACCGCCGCGGCTGGTGGCACTGGGAAGCTGCACCAGTGCTCAATCTGTCACAAGGCTTTTCCGACCGGTCAGGCCCTCGGTGGACACAAGCGCTGCCACTATGACGGCGGCAACGCCAACAACAGCGGTACGGGTGGAACGACGGTGATCACTTCGTCTGAGGGGAATAACTCGTCGGTCACGCACGGCCACCGCGGGTTTGACCTGAACCTCCCTGCTACTTTCACCGACTTATCCCCTGCGGAGTTCGTCAGGGGCGTCGCCGCTGGGAAGAGTGTGAAGATCGGAGAAGAAGAGGTGGAGAGCCCGTTACCGACGACGGCCGCCGCCAAGAAGCCTCGTTTGTTCATGGACGAAGAATGA 891 0.5488 MACTKLHQNDAVLVFSLTLYLLPSIYKASPLFFTLIPLSPLLLLLLSKMALQALNSPSATPNPVFKDDDLHSLEAWTKGKRSKRPRFDHNSPSTEEEYLAICLLMLAHGGTVDPNTTSLSSSPDPDSPMKLSHKCSVCNKSFPSYQALGGHKASHRKSSSSSDHHPPADNSSASTSTAAAGGTGKLHQCSICHKAFPTGQALGGHKRCHYDGGNANNSGTGGTTVITSSEGNNSSVTHGHRGFDLNLPATFTDLSPAEFVRGVAAGKSVKIGEEEVESPLPTTAAAKKPRLFMDEE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1784 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 209 IPR013087 -
Acco01g1784 296 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Acco01g1784 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Acco01g1784 296 MobiDBLite consensus disorder prediction 147 180 - -
Acco01g1784 296 MobiDBLite consensus disorder prediction 164 180 - -
Acco01g1784 296 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Acco01g1784 296 SMART c2h2final6 187 209 IPR013087 -
Acco01g1784 296 SMART c2h2final6 133 155 IPR013087 -
Acco01g1784 296 MobiDBLite consensus disorder prediction 275 296 - -
Acco01g1784 296 SUPERFAMILY beta-beta-alpha zinc fingers 133 209 IPR036236 -
Acco01g1784 296 Pfam C2H2-type zinc finger 133 157 - -
Acco01g1784 296 Pfam C2H2-type zinc finger 187 211 - -
Acco01g1784 296 Gene3D Classic Zinc Finger 131 209 - -
Acco01g1784 296 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 82 250 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1784 Acco-ChrAcco01 32907278 32908443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1784 49 291 C2H2 Transcription Factor Family AT1G27730 48.819 1.32e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g1784 zf-C2H2_6 5.9e-11 CL0361