Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1780 ATGGAGGCTTCTGGGAGGATTTCTGAAGAGTGGAGTTCTCTTAGTGGACTGTACACAGCTGAGGAAGCTGATTTTATGAATCAACTGCTTGATGGTAGCAACTGTTCAGTCCCAGAAGATCTACTATATGGAAATTCAAATTTGGGATTTCCATGTGCGTTTTGGCCTGGTCATGAATCAACAGTTGTGAGCGTCACAGGAATCAACAACACTTCATATTTTCCCTCCAATAATGCTAATTCTAATGCTCATTTTTTCAGTTTCTCACAAGGCAGTAGCTCCAGTACTGATAGTGGTGTTGTTAGCTACCGCCCTAATGATCCGTTGACCAATTTTGATTCTGTGTCTATGGATTTTTCCTTGGGGGATGACAAAATTGTCCCATATAGTGTACAAGGCAATGACCATTGGAACCTTCAGAAAAATGAAAATACTGACGAAGATTCAGGTCTTCTTGACCCAGTTGAGAGGGTTATTGCAGTTGCTGATAGGGAATGTGAAGAACTAGTTTCTTCTGAACCAGCAGAAAAGGGTAAAAGCACCAATCTAGAGAAGTCAGAGAAAAGATCTAGGAGCTTATTGGAGGGACAGAAGAACAAGAGGAATGTTAAATCAAGGAAGAATACAAAGTCTGAATCTATAAGCAAATATGAAGAGGAGAGGAGCTTTCAGAGGCAGAGCTCGAGTAGTTGCTGCTCAGAGGATGATTCCAATGCTTCTCAGGAGCCAAATGTGGGGTCCACTTCAAGTTTAAGTCCTAAAGATTCTGCATCTCTCAAGTCTAATGGCAAATCAATGTCTGCTAAAAGTCCTGCCACTGATCCCCAGAGCGTATATGCAAGAAGAAGAAGAGAAAGAATCAACGAAAGGTTGAAAATCCTACAAAACCTTGTCCCCAATGGAACTAAGGTGGACATAAGCACCATGCTCGAGGAAGCAGTTCAATATGTAAAGTTCTTACAGCTTCAAATAAAGCTTCTGAGCTCTGATGATCTGTGGATGTATGCTCCTATTGCTTACAATGGATTGAACATTGGACTAGACCTTAACATCGCGCCCACCAAACAACCATAG 1074 0.4162 MEASGRISEEWSSLSGLYTAEEADFMNQLLDGSNCSVPEDLLYGNSNLGFPCAFWPGHESTVVSVTGINNTSYFPSNNANSNAHFFSFSQGSSSSTDSGVVSYRPNDPLTNFDSVSMDFSLGDDKIVPYSVQGNDHWNLQKNENTDEDSGLLDPVERVIAVADRECEELVSSEPAEKGKSTNLEKSEKRSRSLLEGQKNKRNVKSRKNTKSESISKYEEERSFQRQSSSSCCSEDDSNASQEPNVGSTSSLSPKDSASLKSNGKSMSAKSPATDPQSVYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGLNIGLDLNIAPTKQP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1780 357 Gene3D - 271 328 IPR036638 GO:0046983
Acco01g1780 357 MobiDBLite consensus disorder prediction 167 280 - -
Acco01g1780 357 Pfam Helix-loop-helix DNA-binding domain 281 321 IPR011598 GO:0046983
Acco01g1780 357 MobiDBLite consensus disorder prediction 167 223 - -
Acco01g1780 357 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 96 343 - -
Acco01g1780 357 FunFam Basic helix-loop-helix transcription factor 272 329 - -
Acco01g1780 357 MobiDBLite consensus disorder prediction 224 274 - -
Acco01g1780 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 336 IPR036638 GO:0046983
Acco01g1780 357 SMART finulus 277 326 IPR011598 GO:0046983
Acco01g1780 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Acco01g1780 357 CDD bHLH_AtIND_like 272 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1780 Acco-ChrAcco01 32776957 32778439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1780 1 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 42.021 1.05e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g1780 HLH 3e-09 No_clan