Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1736 ATGTCGTCGAGCTCGAACAATGGAGGAAGAGGAGGAGGAAGGAGGAGCAAGGGTCGCCAGAAGATTGAGATAAAGAAGATGGAGAACGAAAGCAACCTGCAAGTCACCTTCTCGAAGAGACGAGCTGGTCTCTTCAAGAAGGCCAGTGAGCTTTGTACTCTCTGTGGCGTTGAGGTCGCCATTATCGTTTTCTCTCCGGGCGAGAAGGCTTACTCGTTTGGCCATCCGAGTGTTGATGCTGTGTTGGACCGCTTCCTGAATGGCGGCGTAGCGCCAATGCCTCCTTCGGCTTCCATGCAGCTGATGGAAGCTCACCGGCGGGCCGCCGTCCAGGAGCTTAACGCTCAGCTGACTAGCCTCTTGGAAGAGCTCGAGGTGGAGAAGAAGATAGGACAAGAACTGAACAAGAAGATGAAGGAGATGGAGACTGACTTCTGGTGGGCCCAACCTGTTGGGATTCTGAGTAAGGATCAGCTAAGGATCTATAAGGTGCGTCTGGAGGAGATGAAGAAGACAGTCTGGCGCCGAGCTGAACAGATTATGGCTTACCACATTGGCAATAATTCGTCTCAGTTCTTTGTGGGTGGCAGCTCCTCTTCCTCCGCCGCCGAGGGTTTACAGATGCCGCAGCCGCCACTGGTGATGCAGAATATGGCAGCTCCACCGCCACCTGAAGCTCAGGTGTTTCCTTCTCCTCCCGTGCAGCCGCCGCCCGTACTCCTGCACCAGCAACCTCCGGTGGTTCAGAATCCGATGATGTTCGATGGAAACATGATGATGATGTCTCCACAGCCGCAGCCGCCGCCACCTGCACCCGAAGGATTCCAGCAGTATCAGAACATGGGAGAGAGCAGCGGAGAAGGATTCTTCTGA 873 0.5475 MSSSSNNGGRGGGRRSKGRQKIEIKKMENESNLQVTFSKRRAGLFKKASELCTLCGVEVAIIVFSPGEKAYSFGHPSVDAVLDRFLNGGVAPMPPSASMQLMEAHRRAAVQELNAQLTSLLEELEVEKKIGQELNKKMKEMETDFWWAQPVGILSKDQLRIYKVRLEEMKKTVWRRAEQIMAYHIGNNSSQFFVGGSSSSSAAEGLQMPQPPLVMQNMAAPPPPEAQVFPSPPVQPPPVLLHQQPPVVQNPMMFDGNMMMMSPQPQPPPPAPEGFQQYQNMGESSGEGFF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1736 290 SUPERFAMILY SRF-like 18 87 IPR036879 GO:0003677|GO:0046983
Acco01g1736 290 MobiDBLite consensus disorder prediction 263 290 - -
Acco01g1736 290 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Acco01g1736 290 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Acco01g1736 290 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Acco01g1736 290 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Acco01g1736 290 CDD MADS_MEF2_like 20 88 IPR033896 GO:0000977|GO:0045944
Acco01g1736 290 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Acco01g1736 290 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Acco01g1736 290 Gene3D - 96 194 - -
Acco01g1736 290 Coils Coil 107 144 - -
Acco01g1736 290 FunFam Agamous-like MADS-box protein AGL62 29 93 - -
Acco01g1736 290 Gene3D - 29 91 IPR036879 GO:0003677|GO:0046983
Acco01g1736 290 MobiDBLite consensus disorder prediction 1 25 - -
Acco01g1736 290 PANTHER MADS BOX PROTEIN 19 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1736 Acco-ChrAcco01 31738931 31739803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1736 14 207 Type I MADS-box Gene Family AT5G60440 54.545 4.68e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco01g1736 SRF-TF 2.8e-25 No_clan