Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1729 ATGGCAGACGCAGACCCAGTTCCCTCGAAGAAGACGAAAGGCCAGCAGAAAATCGAAGTCAAAGCGATGGACGACGCTAAGAAGCGAAGTGTCACATTCACAAAACGCAAAGCTGGCCTTTTCAGGAAGGCGGACCAGCTGTGCAATCTCACCGGCGCCGAGGTGGCTCTCATGGTGATATCTCCGGGAGGAAAGCCGTACACATTCGGGAATCCCGACATGGACACGGTGATAGCGAGGTACAAGAGTCACGCACCGGCGACGGTGACGTTAGAGCGGCAGAAAGCGGAGCTCAGGGAAATCATGGAACAGCTGGCGTACGAGGATAGGCGAGCTCAGCAACTGAGGAATAATAGGCGATATATTACGATGGAAACGTGGATGGCTACTCCAACTCAAACATATTCTCCGTCTCAACAAGAGATGATTAGGGAGCAAATGGAGCAACTGAACAATGTGCTCTCTCTGGGCTTCAACTCAGTTGGATTCTGGTGGCCGCCTCCGGATTCCACGTTGCCAGAGCTCCAGGCGAGTTCTGGGCTTTCATTTGGGTCCTTCATGAACCCGGTGACTGAAAGTTCGAATTTTGGAGGTAACATGTTACTTACGCCCTCTGGTAACTTCTACACTGGTGAATCGTCGTCGGCGGCGGTACCGGGTGGGTCTCAGAATCTTATGTTTACAGACAACATGTTGCTGAACACCACAGGAAGCTTCTACACAGGCGAATCATCGTCAATGGCGCCGGCAGGTGCTCAGAATCAAATGTCAGAGGGTAACATTGTAATTGCACCTCCCAGTAACTTCTACACAGGCGAACCGTTGTCTAAGTTGCCGGCGGAGAATCAGAATCACGTTTTTGAGGATAACATGATGGTTACACCTCCTGGTAACTTCTACACAGGCGAATCGCCTTATTCAATGGTGCCTGCTGAGACTCTGAATGATCATATGTTTCGGAATAACATGATGCTTGACAACGATGGCAGCTTCTACACATGTGGATCCTCGTCAATGGCGTCAGAAGCTCAGAGGACACTATTTGATAATAACATGGTCTTTGCACCTAATGATAACTTCTTTACAAGTGGATTCTTGTCTGAAGAACCGACTATGAATCAAATGATTAATGAAAGCATTATGATTCCTCCGAATGATAACTTCTATACATGTGGACCCTCGGTGGTGGTGCCACCACCGGCTGATGAGAATCAAATATTTGATGAAAACATTATGGTTCCTCCAAATGACAATTTCTATACAAGCCGATCCTTGGTGATGGTGCCGTCACCGCCACCGCCACCGCCACCGCCGGGGGATGAGAATCAAATATTTGATGAAAACATGATGGTTCCTCCAAATGACAATTTCTATACAATCGGATCCTTGGCGGTGGTGCCACCACCGCCACCACCGGCGGATGAGAATCAAATATTTAATGAAAATATTATGGCTCCTCCTCCACATGATAACTACAACACATTTGAATCTTCGATGGTGACGGCAACTGATGATGAGAATATTTTTAGTGACGAAAACTTGAGGTTGTTTCTAGATGATGATGGATTCTATGGAAGCAGTTCTTCTATGGTGCCGCCGGTGGAGAATCAAATGTTTGATGGACATGTGGTGGCGCGGCCGCAGCCTCCGCCTTGTGATGGATATGGCACTGGACTTTCAGGTTTCAACTGA 1692 0.4805 MADADPVPSKKTKGQQKIEVKAMDDAKKRSVTFTKRKAGLFRKADQLCNLTGAEVALMVISPGGKPYTFGNPDMDTVIARYKSHAPATVTLERQKAELREIMEQLAYEDRRAQQLRNNRRYITMETWMATPTQTYSPSQQEMIREQMEQLNNVLSLGFNSVGFWWPPPDSTLPELQASSGLSFGSFMNPVTESSNFGGNMLLTPSGNFYTGESSSAAVPGGSQNLMFTDNMLLNTTGSFYTGESSSMAPAGAQNQMSEGNIVIAPPSNFYTGEPLSKLPAENQNHVFEDNMMVTPPGNFYTGESPYSMVPAETLNDHMFRNNMMLDNDGSFYTCGSSSMASEAQRTLFDNNMVFAPNDNFFTSGFLSEEPTMNQMINESIMIPPNDNFYTCGPSVVVPPPADENQIFDENIMVPPNDNFYTSRSLVMVPSPPPPPPPPGDENQIFDENMMVPPNDNFYTIGSLAVVPPPPPPADENQIFNENIMAPPPHDNYNTFESSMVTATDDENIFSDENLRLFLDDDGFYGSSSSMVPPVENQMFDGHVVARPQPPPCDGYGTGLSGFN 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1729 563 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 69 IPR002100 GO:0003677|GO:0046983
Acco01g1729 563 PANTHER MADS BOX PROTEIN 16 151 - -
Acco01g1729 563 Gene3D - 26 95 IPR036879 GO:0003677|GO:0046983
Acco01g1729 563 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Acco01g1729 563 Coils Coil 91 118 - -
Acco01g1729 563 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Acco01g1729 563 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Acco01g1729 563 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Acco01g1729 563 SUPERFAMILY SRF-like 14 90 IPR036879 GO:0003677|GO:0046983
Acco01g1729 563 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1729 Acco-ChrAcco01 31620730 31622421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1729 10 156 Type I MADS-box Gene Family AT5G60440 33.742 2.64e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco01g1729 SRF-TF 3.6e-19 No_clan