Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1728 ATGAAGAGAAAGTCAAGTTCAGGTCGCCAAAAGATCCCTATTGAGAGAATACCAAAGAAAAGCCATCTTCAAGTCACCTTCTCAAAGCGTCGCTCTGGGCTATTCAAGAAAGCCAGCGAGCTTTGCACGCTCTGTGGCGCCGAGATCGCCATTATCGTCTTCTCTCCAGCCGACAAGGCCTTCTCCTTTGGCCACCCGGAGGTGGAATCCATAATCGACCGCTACATCAGACGAAACCCTACGTCAGAATCCGGGGCCCAACACCCGCTGGTGGAGGCCCACCGGAATGCGAACGTCCGGGAGCTGAACATGCAGCTGACACAGCTCCTAGGGCAAGTGGAAATGGAGAGGAAGAGAGGAGAAGAGCTAGATCAGGTGAGGAAGGCGAGACAGAGACAGTTTTGGTGGGAAAACCCTATTGAAGAATTAGGGTTTAATGAGTTGCAACAAGTTATGGTTTCAATGGAGGAACTGAAGAAGGAGATAGGGAAAATGGCGAGCGAGATGATGATGATGGAGCATAACAGTTTGGCTACTGATTCATCAGTTATTGTTGGAGGAGCTCATTCTAATGGTGGACTACTTGGACGCTATAATAATAATGATGTGTTTGAGGATAAACATGTTATTATTAACAGTATTAATGCTGCTTCTTCCTCTAGTAATAATATTCTTCCTCAACATGCCTATAACAACAATCTCAATTGTAGGCTTGGATATCTTTGA 726 0.4614 MKRKSSSGRQKIPIERIPKKSHLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPADKAFSFGHPEVESIIDRYIRRNPTSESGAQHPLVEAHRNANVRELNMQLTQLLGQVEMERKRGEELDQVRKARQRQFWWENPIEELGFNELQQVMVSMEELKKEIGKMASEMMMMEHNSLATDSSVIVGGAHSNGGLLGRYNNNDVFEDKHVIINSINAASSSSNNILPQHAYNNNLNCRLGYL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1728 241 Coils Coil 99 119 - -
Acco01g1728 241 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Acco01g1728 241 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Acco01g1728 241 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Acco01g1728 241 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Acco01g1728 241 Coils Coil 148 175 - -
Acco01g1728 241 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Acco01g1728 241 Gene3D - 87 183 - -
Acco01g1728 241 Gene3D - 19 86 IPR036879 GO:0003677|GO:0046983
Acco01g1728 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Acco01g1728 241 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Acco01g1728 241 SUPERFAMILY SRF-like 8 91 IPR036879 GO:0003677|GO:0046983
Acco01g1728 241 CDD MADS_MEF2_like 8 75 IPR033896 GO:0000977|GO:0045944
Acco01g1728 241 PANTHER MADS BOX PROTEIN 9 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1728 Acco-ChrAcco01 31600985 31601710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1728 4 229 Type I MADS-box Gene Family AT5G60440 44.915 4.40e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco01g1728 SRF-TF 3.4e-23 No_clan