LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g1724	ATGCATAATGCGACAGAGACGGACAAGTACAACCAAGCAGTTAGTGAGTTATTACAAGGACTAAGAGACAAAGCTACGAGTGGAGATTCTCTTCGTAAGTTTGCTACAGCAAATCAATCTGCTTCAAACTTCCAAATTGTGTTTGGTGCACTTCGGTGTACTCCTAATTTGTCTCAGCAAGAATATCTTAACTACTTATTGGTGGTTAGCTCTGAAGTTTTCATCTATAATACTCTGACAAGTTCCATGGCTAAAGCAAATTTTATATTGCTTCAACTTCTCTGTGTTCTTCTCTCTCAATTATATGAAGCCGCCAGCCAACCAGAATTTCGATACTATGATTGCAACAACAACAGCAACACAACAAATAACACCTACCAGACCAACCTGAATACCCTTTTATCAAATCTCACATCCAACAAACAAATAGATTATGGCTTCTACAATCACTCTTATGGTAATTATCCAAATACAATATATAGTGTTGGGTTATGCAGGGGAGATGTTATGCCAGACTTTTGCCGTAGTTGCCTCAAAAATTCGTCGATCCTACTGCCACGGCTATGTCCAAATCAGAAGCAAGCCTTTGGGATGTACGATGAGTGCATGTTATCTCACTCAAACACCTCAATATTAGGCAATCAGGTGAATCCTATTGTCACGGTTTATATGTGGAACGCAAACTCTGCGACAAGTTGGAATCAGTACAATCAGGTCCTTGTGGGTCTACTGCGAAATCTAAGTAGCAGAGCTGCATCTGGCGACTCCAATCTGAAGTTTGCTGCAGGAAATGAAGAAGGACCTGACCTTCAAACCATATATGCTGTTGTTCAGTGCACACCTACTCTGAACGAGTCAGAATGCAACAATTGCCTGCTTTGGGCCATCTCACAAATTTCAAATTGCTGCAATGGCAGGCCAGGTGGTAGGGTTATTACACCCATATGTAACTTTAGATATGAAAGTAACCGCTTCTATGCAGTTGCAGCTGATGTACCTTTATCCGCTCCGTCGCCACTAGTGTCTCCTCCTCCGCCTCCTCTGCTTACATCTCCATCGACTCCTCCATCCACCAACACAACATCTTCAAAAGGAAGAAAATCACAAACTATCATTGCCTATGTTGTTCCAACTTCCGCACTGGTGCTGCTGCTTATCTTTGTATGGATCTGTGTAAGAGTGAGAAAGCAAGGAAGGAAATTTCCAAGTGAGACTGAAGCTGATGATCCAATTGAACTCACTGAATCAATACAATTTGAATTTGACACCCTCAAAGTTGCTACAAATAACTTCTCTGAAGCTAACAAGCTTGGACAAGGAGGATTTGGACCAGTTTACAAGGGCAAGCTCTCCAACGAAAAAGTGATTGCAGTAAAAAGTGGGTATATGGCACCTGAGTATGCAAGGCTTGGACGATTCTCAGCGAAGTCTGATGTCTTCAGTTTTGGTGTACTAATTCTAGAGATTGTGAGTGGGCAAAAGAATGGCGGCTTTCATAATTTGGAGAATGTAGAGCATCTTCCAAGTTTGGGATGGAAAAGCTGGAGGAAAGGGATGGCCTCGAACATTATAGATCCCACGTTAAAAGATGGTTCAAGAAATGAAATAATGAGATGCCTTCACATTGGTTTACTGTGTGTTCAAGAAAAAGCTGCTCACAGACCAACCTTGGCTTCCCTTGTGCTTATGCTAAGCAGCCACTCTGTCTCCCTTCAAGCACCCAGGAAACCTGCATTTTTTATGAATGATATAAGTTCATCAGGCACACAATCTAGGCCTCACAGATCTATGTCAACAAGCTCCAATGAGAAAAAAAGTGAATGTGTAGAATCATTATCTGTAAATGAGGCCTCAATAACTAATATTTATCCTCGATAA	1878	0.4148	MHNATETDKYNQAVSELLQGLRDKATSGDSLRKFATANQSASNFQIVFGALRCTPNLSQQEYLNYLLVVSSEVFIYNTLTSSMAKANFILLQLLCVLLSQLYEAASQPEFRYYDCNNNSNTTNNTYQTNLNTLLSNLTSNKQIDYGFYNHSYGNYPNTIYSVGLCRGDVMPDFCRSCLKNSSILLPRLCPNQKQAFGMYDECMLSHSNTSILGNQVNPIVTVYMWNANSATSWNQYNQVLVGLLRNLSSRAASGDSNLKFAAGNEEGPDLQTIYAVVQCTPTLNESECNNCLLWAISQISNCCNGRPGGRVITPICNFRYESNRFYAVAADVPLSAPSPLVSPPPPPLLTSPSTPPSTNTTSSKGRKSQTIIAYVVPTSALVLLLIFVWICVRVRKQGRKFPSETEADDPIELTESIQFEFDTLKVATNNFSEANKLGQGGFGPVYKGKLSNEKVIAVKSGYMAPEYARLGRFSAKSDVFSFGVLILEIVSGQKNGGFHNLENVEHLPSLGWKSWRKGMASNIIDPTLKDGSRNEIMRCLHIGLLCVQEKAAHRPTLASLVLMLSSHSVSLQAPRKPAFFMNDISSSGTQSRPHRSMSTSSNEKKSECVESLSVNEASITNIYPR	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g1724	625	ProSiteProfiles	Gnk2-homologous domain profile.	108	211	IPR002902	-
	Acco01g1724	625	Pfam	Salt stress response/antifungal	231	322	IPR002902	-
	Acco01g1724	625	Pfam	Salt stress response/antifungal	115	208	IPR002902	-
	Acco01g1724	625	FunFam	Cysteine-rich receptor-like protein kinase 10	220	325	-	-
	Acco01g1724	625	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	108	211	-	-
	Acco01g1724	625	Pfam	Protein tyrosine and serine/threonine kinase	461	562	IPR001245	GO:0004672\|GO:0006468
	Acco01g1724	625	Gene3D	Phosphorylase Kinase; domain 1	407	464	-	-
	Acco01g1724	625	SUPERFAMILY	Protein kinase-like (PK-like)	461	598	IPR011009	-
	Acco01g1724	625	MobiDBLite	consensus disorder prediction	582	608	-	-
	Acco01g1724	625	ProSiteProfiles	Gnk2-homologous domain profile.	218	325	IPR002902	-
	Acco01g1724	625	PANTHER	CYSTEINE-RICH REPEAT SECRETORY PROTEIN	7	62	-	-
	Acco01g1724	625	SUPERFAMILY	Protein kinase-like (PK-like)	413	459	IPR011009	-
	Acco01g1724	625	Gene3D	-	218	325	IPR038408	-
	Acco01g1724	625	Gene3D	-	107	210	IPR038408	-
	Acco01g1724	625	Gene3D	-	1	95	IPR038408	-
	Acco01g1724	625	ProSiteProfiles	Gnk2-homologous domain profile.	1	104	IPR002902	-
	Acco01g1724	625	MobiDBLite	consensus disorder prediction	341	364	-	-
	Acco01g1724	625	Gene3D	Transferase(Phosphotransferase) domain 1	465	569	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g1724	Acco-ChrAcco01	31504234	31508352	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g1724	451	625	Receptor kinase-like Gene Family	AT4G05200	37.500	9.09e-35	138

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Acco01g1724		PK_Tyr_Ser-Thr	9.6e-08	CL0016