Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1672 ATGATGGCAAGGAGGTTGTGGGCTGGCCTTAATAGATGGTTAGGGTTTGAGGCTCTATATAGCTCAAGCCCGAAGCTACTTTCGCTCCCTCTCTTTTCCGTTCACTCTCTCATCTCCCCAGATTTCTTCCCAACGATGATGCAGCCTGGACCTGGTATGGCTCCCCCAAACATGGGTCAACAACCCACCCAACAATACCAGCAGCAGCAACCCTACATGATGATGCCACCGCAGGCTCAGGCGCCGCCTATGTGGGCTCCTTCTGCCCAACCCCCGCCGCTGCAGCAGGCCGTTGCTCCACCGCAATCTACCCAACATGTCCAGCCTAGCAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAGAACTACCTGTATAATTGTTTTGCGCATACAGGCGAGGTGGCTTCTGTGAAAGTCATTCGTAATAAGCAAACTAATGCATCGGAAGGTTATGGGTTTATTGAGTTTTATACTCGTGCTGCTGCAGAGAGAATTCTTCAAACATTTAATGGCACAATTATGCCTAATGGTGGGCAAAACTATAGACTGAATTGGGCAACTTTTAGTGCTGGTGATAAACGTCATGATGATAGTCCAGATTACACTATTTTTGTTGGAGACTTGGCTGCCGATGTCACCGATTACCTGCTGCAGGAGACCTTTCGGGCTAGATATCCCACAGTTAAGGGTGCAAAGGTTGTAATTGATAGGCTCACTGGGAGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATTCAAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCACAATCCTCAAGGTTCACAGAACGAGAATGATCCAAATAATACAACTATTTTCGTCGGCAATTTGGATCCTAATGTCACTGATGATCATTTGAGGCAAGTTTTTGGTAAATACGGAGAATTAATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTTGTCCAATTTGCCGATAGGAGTTGTGCTGAAGAGGCTCTGCGGATTCTAAATGGAACACAGTTGGGCGGTCAAAGTGTTCGCCTTTCATGGGGCCGCAGTCCTTCAAACAAGCAGGGTCAGCCAGATCCAAGTCAGTACGGGGGATATTATGGGTACGCTCAAGGGTATGAGAATTATGGATATCCTCCTGCTGCTGCTACACAGGACCCCAACATGTATGGAAGCTACCCTGGTTATGCTAACTACCAACCACCACAGCAACAACAGCAGATGGGGTATAGCTAA 1344 0.4754 MMARRLWAGLNRWLGFEALYSSSPKLLSLPLFSVHSLISPDFFPTMMQPGPGMAPPNMGQQPTQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPLQQAVAPPQSTQHVQPSSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTNASEGYGFIEFYTRAAAERILQTFNGTIMPNGGQNYRLNWATFSAGDKRHDDSPDYTIFVGDLAADVTDYLLQETFRARYPTVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYHNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGKYGELIHVKIPAGKRCGFVQFADRSCAEEALRILNGTQLGGQSVRLSWGRSPSNKQGQPDPSQYGGYYGYAQGYENYGYPPAAATQDPNMYGSYPGYANYQPPQQQQQMGYS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1672 447 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 106 399 - -
Acco01g1672 447 SUPERFAMILY RNA-binding domain, RBD 300 412 IPR035979 GO:0003676
Acco01g1672 447 SUPERFAMILY RNA-binding domain, RBD 202 302 IPR035979 GO:0003676
Acco01g1672 447 SMART rrm1_1 315 382 IPR000504 GO:0003723
Acco01g1672 447 SMART rrm1_1 210 284 IPR000504 GO:0003723
Acco01g1672 447 SMART rrm1_1 117 192 IPR000504 GO:0003723
Acco01g1672 447 MobiDBLite consensus disorder prediction 380 396 - -
Acco01g1672 447 CDD RRM1_SECp43_like 117 197 - -
Acco01g1672 447 CDD RRM2_SECp43_like 208 287 - -
Acco01g1672 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 274 IPR000504 GO:0003723
Acco01g1672 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 183 IPR000504 GO:0003723
Acco01g1672 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 379 IPR000504 GO:0003723
Acco01g1672 447 MobiDBLite consensus disorder prediction 433 447 - -
Acco01g1672 447 FunFam Polyadenylate-binding protein RBP45C 201 292 - -
Acco01g1672 447 FunFam Polyadenylate-binding protein RBP45C 293 396 - -
Acco01g1672 447 FunFam Polyadenylate-binding protein RBP45 55 200 - -
Acco01g1672 447 MobiDBLite consensus disorder prediction 78 110 - -
Acco01g1672 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 196 IPR000504 GO:0003723
Acco01g1672 447 Gene3D - 53 203 IPR012677 -
Acco01g1672 447 MobiDBLite consensus disorder prediction 48 67 - -
Acco01g1672 447 MobiDBLite consensus disorder prediction 380 399 - -
Acco01g1672 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 386 IPR000504 GO:0003723
Acco01g1672 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 288 IPR000504 GO:0003723
Acco01g1672 447 SUPERFAMILY RNA-binding domain, RBD 90 195 IPR035979 GO:0003676
Acco01g1672 447 Gene3D - 208 284 IPR012677 -
Acco01g1672 447 Gene3D - 290 395 IPR012677 -
Acco01g1672 447 MobiDBLite consensus disorder prediction 288 314 - -
Acco01g1672 447 MobiDBLite consensus disorder prediction 423 447 - -
Acco01g1672 447 MobiDBLite consensus disorder prediction 283 314 - -
Acco01g1672 447 MobiDBLite consensus disorder prediction 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1672 Acco-ChrAcco01 30501668 30510604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1672 118 393 Eukaryotic Initiation Factors Gene Family AT1G22760 24.739 7.59e-20 90.5