Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1659 ATGAACAACTCAAATCGTGCAAGCAAAATTGCCAAAGATACAAGAGCAGAAGATTCTGAGCAGCAGCTGAAATTCTCGGAAGATGAGGAAGCACTCATTGCTAGAATGTTCAGATTGGTTGGCAACAGATGGCCTTTGATTGCTGGTAGAATACCTGGAAGGACCGCACTGGAGATTGAAAAGTATTGGACTTCAAAGTGCTCTTCATGA 210 0.4286 MNNSNRASKIAKDTRAEDSEQQLKFSEDEEALIARMFRLVGNRWPLIAGRIPGRTALEIEKYWTSKCSS 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1659 69 CDD SANT 24 63 IPR001005 -
Acco01g1659 69 ProSiteProfiles Myb-like domain profile. 17 67 IPR001005 -
Acco01g1659 69 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 69 IPR017930 -
Acco01g1659 69 MobiDBLite consensus disorder prediction 1 22 - -
Acco01g1659 69 FunFam MYB-like transcription factor 24 66 - -
Acco01g1659 69 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 23 67 - -
Acco01g1659 69 SMART sant 21 69 IPR001005 -
Acco01g1659 69 Pfam Myb-like DNA-binding domain 24 63 IPR001005 -
Acco01g1659 69 Gene3D - 23 69 - -
Acco01g1659 69 SUPERFAMILY Homeodomain-like 24 65 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1659 Acco-ChrAcco01 30125811 30126966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1659 25 68 MYB Transcription Factor Family AT5G14750 52.273 2.36e-13 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco01g1659 Myb_DNA-binding 7.5e-09 CL0123