Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1620 ATGGACTGGTGTAGGGGTCCCACCGTTGGCCGGGGTGCCACCGCCACCGTCTCCATTGCCCATGATCGCCGGTCAGGTCGCTTGTTCGCGGTCAAATCAGCCGAGCTCAACCGGTCGGAGTTGCTTCAGAGGGAACAGAAAATTCTGTCCACACTGAAATCTCCTCACATAATAGCATACCAAGGTCATGATGTTACATTAGAGAGTAATGTACAGTGGTACAATCTGATCATGGAGTATGCACCTTACAGTACGCTCGCTGACATGGCTCGCCAGCGAGACGGGCTGGAGGAGGCGGTGGTCCGAACCTATGCGCGCCAAATCTTGCTGGGGCTTGACCATCTTCATTCTAATGGAATAGTGCATGGCGATATTAAAGGTAAGAATGTTTTGGTGACAGAGGAAGGGGCTAAAATTGCAGACTTGGGTTGTGCTCGGACGGTGTCTGAGACAGTGGGTTACGGCGGAGGGGTTGCCGGTACACCAGTGTTCATGGCTCCGGAGGTGGCGCGTGGAGAGCAACAGGGGTTCGCCGCTGACGTGTGGTCTCTGGGGTGTACTGTATTGGAGACGATCACCGGGCGAGCTCCCTGGCCGGACGTATCCGACCCGGTTAGTGCGATTTATCGAATCGGGTTTTCCGGCGATGTGCCGGAGATTCCCGGGTTCATGTCGGAGCAAGGGAGGGACTTTGTGAGCAAGTGTCTGAAGATAGACCCGAATGAGCGTTGGTCCGTGAGCGAATTCCTCAGACATGAGTTCGTGGAAGAATCAACTTCGTCCATGAAAGAATTTGGAAGCTCGAAGTCGGATACTCCAACAGGTGTAATGGATGGATCCATCTGGGATTCATGGGAACCCACCCAAAATCCGACCCGTATTCACTCCTGCAATTCTGGCAGAGACAGGATTCGTAGGTTGTGCACAGAAGCTACGACGTCGTTTGACGGCTATGAGCCCAACTGGGAATGGGAAGGAGAGTGGATTACTGTGAGAAATAGCAATGTGACAAAAGAGAATTACGATATTGGCCTTGGAAATGAGACTAGTTTGGTGCGTTGTTATGAACCCAAAACAGTAATTACTGTTGAGTTGGGTCTTTGTAATTGTAATATTAATTGTAAGGTTAATGGTTGTAACAAAGGATTATTGTTAGGTTATTATGATTGGTTATGTATTAGAATTATTGTTGGGAAAAGGACGATTGAATCTCAAAATAAGGAAATAATTGTTCATGATTTGCTTCTGTGTCTATCCCTATAG 1263 0.4901 MDWCRGPTVGRGATATVSIAHDRRSGRLFAVKSAELNRSELLQREQKILSTLKSPHIIAYQGHDVTLESNVQWYNLIMEYAPYSTLADMARQRDGLEEAVVRTYARQILLGLDHLHSNGIVHGDIKGKNVLVTEEGAKIADLGCARTVSETVGYGGGVAGTPVFMAPEVARGEQQGFAADVWSLGCTVLETITGRAPWPDVSDPVSAIYRIGFSGDVPEIPGFMSEQGRDFVSKCLKIDPNERWSVSEFLRHEFVEESTSSMKEFGSSKSDTPTGVMDGSIWDSWEPTQNPTRIHSCNSGRDRIRRLCTEATTSFDGYEPNWEWEGEWITVRNSNVTKENYDIGLGNETSLVRCYEPKTVITVELGLCNCNINCKVNGCNKGLLLGYYDWLCIRIIVGKRTIESQNKEIIVHDLLLCLSL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1620 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Acco01g1620 420 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Acco01g1620 420 MobiDBLite consensus disorder prediction 263 283 - -
Acco01g1620 420 Pfam Protein kinase domain 8 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1620 420 Gene3D Transferase(Phosphotransferase) domain 1 3 295 - -
Acco01g1620 420 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1620 420 SUPERFAMILY Protein kinase-like (PK-like) 3 269 IPR011009 -
Acco01g1620 420 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1620 420 CDD STKc_MAPKKK 2 255 - -
Acco01g1620 420 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1620 Acco-ChrAcco01 29524860 29526122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1620 2 332 MAP Kinase Kinase Kinase AT5G55090 46.839 6.02e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Acco01g1620 Pkinase 9.3e-52 CL0016