LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g1612	ATGACCATAAAAGCAAGCACCAAGTTATTAGTCTGTCTTTTGTTTCTGATTCTGATTCTCAGAGTCCAAGCTTACTGTAGCACTGGTTGCAAGCTTGCTTTAGCTTCGTACTATGTCTGGGAAGGCGCAAATCTCACATACATAAGCCAAATATTCGGCCAGGAATTTTCTGAGATTCTCAAATACAATCCAACAATCGCCAATCCGGATTTTGTTCGGAGCACAACCCGGATCAACGTTCCGTTCACGTGCGATTGCTTGAACGGCGTCTTCTTAGGGCACACTTTCATTTACAAAACCCAGCCCGGCGATACGTACCATAAAATTGCTGAGCAGGCTTTTTCTAGCCTGACGACCGATGATTGGTTGGAGAGGGTGAATCAGTATGAAGTTATTGCTATACCGGTAAACGTTGGGATCAACGTCACTGTCAATTGCTCGTGCGGCAATAGTCATGTGTCGAGGGATTATGGATTGTTTTTGACGTACCCACTCCGGAGCGGCGACAGCTTGTCGGAGTTAGCGGCGGATTCCGGTGTACCGGCGGAGATTATACAGAGGTATAATCCGGCCGCTGATTTCAACGCGGGAAGGGGACTGGTCTTTGTGCCGGCGAAAGGAATATCAGGTGGGGCCATTGTTGGAATAAGTATTGGAGCAGTTTCTGGGGTTTTAGTATTGGCACTTGTTCTGTATGTTATTGTTTATAGAAGAAAGAAAGTGGCTGAGGCTTCCCTTCCTCCTCCACCATCTCAAGATCACTATCTTCGGATTGGACAAGCTTCAGGAAGCAACTTGGATAAGGCTTCAGAATCTATTGATGTGGCTTCGCCAAGGCTGACAGGAATCACAGTAGACAAGTCAGTAGAGTTCTCATTTGAAGAGCTTGCTAAAGCTACCAATGGCTTTTCTATTTCCAATAAGATCGGTCAAGGTGGCTTTGGAACTGTTTACTACGCAGAGCTTCGAGATGAGAAAGCTGCAGTTAAGAAGATGGATATGCAAGCTTCAAAAGAATTCCTTGCTGAACTCAAGGTTCTGACACATGTTCACCACTTGAACTTGGTACGCTTAATAGGGTATTGTATTGAGGGCTCTTTATTTTTGGTTTATGAGTACATTGAGAATGGAAATTTAGGCCAACATTTACGTGGTTCAGGAAGAGAATCACTTGCATGGCCAACCAGAGTTCAAATTGCCCTGGACGCAGCGAGAGGACTCGAATACATCCACGAGCATACAGTTCCTGTCTACATTCATCGGGACATTAAATCAGCCAACATTTTGATTGATAAGAACTTTCGTGCAAAGGTTGCAGATTTTGGTCTGACAAAACTTACTGAATATGGAAGTTCTTCACTTCATACACGACTTGTGGGTACATTTGGCTATATGCCTCCAGAATATGCGCAATACGGTGACGTTTCGGCCAAAGTAGACGTATATGCTTTCGGAGTAGTGCTATATGAACTCATATCAGGGAAGGAAGCTATTGTAAAGCCAAAAGAGCCTGAGAACGAATCAAAAGGACTTGTTTCCTTGTTTGAAGAGGCTTTAGCGCAGCCAAACGAGGAAGAACACCTTCGTAAGCTTGTTGATCCTAGGCTTGGTGCTAACTACCCTTTTGAATCGGTATATAAGATGACTCAGCTTGCAAAAGCTTGCACACATGATAATGCACAAATAAGGCCAAGCATGAGATCCATTGTAGTTGCACTCATGACACTCTCTTCTTCAACTGAGGATTGGGATGTTGGCTCCTTTTATGAATCCCAAGCTATGCATCTCATTTCTGGAAGGTAG	1803	0.442	MTIKASTKLLVCLLFLILILRVQAYCSTGCKLALASYYVWEGANLTYISQIFGQEFSEILKYNPTIANPDFVRSTTRINVPFTCDCLNGVFLGHTFIYKTQPGDTYHKIAEQAFSSLTTDDWLERVNQYEVIAIPVNVGINVTVNCSCGNSHVSRDYGLFLTYPLRSGDSLSELAADSGVPAEIIQRYNPAADFNAGRGLVFVPAKGISGGAIVGISIGAVSGVLVLALVLYVIVYRRKKVAEASLPPPPSQDHYLRIGQASGSNLDKASESIDVASPRLTGITVDKSVEFSFEELAKATNGFSISNKIGQGGFGTVYYAELRDEKAAVKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCIEGSLFLVYEYIENGNLGQHLRGSGRESLAWPTRVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTKLTEYGSSSLHTRLVGTFGYMPPEYAQYGDVSAKVDVYAFGVVLYELISGKEAIVKPKEPENESKGLVSLFEEALAQPNEEEHLRKLVDPRLGANYPFESVYKMTQLAKACTHDNAQIRPSMRSIVVALMTLSSSTEDWDVGSFYESQAMHLISGR	600

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g1612	600	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	418	430	IPR008271	GO:0004672\|GO:0006468
	Acco01g1612	600	CDD	STKc_IRAK	309	570	-	-
	Acco01g1612	600	ProSiteProfiles	Protein kinase domain profile.	303	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g1612	600	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	10	587	IPR044812	GO:0019199\|GO:0045087
	Acco01g1612	600	SUPERFAMILY	Protein kinase-like (PK-like)	282	573	IPR011009	-
	Acco01g1612	600	Pfam	Protein tyrosine and serine/threonine kinase	305	572	IPR001245	GO:0004672\|GO:0006468
	Acco01g1612	600	ProSitePatterns	Protein kinases ATP-binding region signature.	309	331	IPR017441	GO:0005524
	Acco01g1612	600	FunFam	LysM receptor kinase 2	282	373	-	-
	Acco01g1612	600	Gene3D	Transferase(Phosphotransferase) domain 1	374	591	-	-
	Acco01g1612	600	SMART	serkin_6	303	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g1612	600	Gene3D	Phosphorylase Kinase; domain 1	288	373	-	-
	Acco01g1612	600	FunFam	PTI1-like tyrosine-protein kinase 3	374	587	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g1612	Acco-ChrAcco01	29334969	29350393	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g1612	1	600	Receptor kinase-like Gene Family	AT3G21630	55.502	0.0	674

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Acco01g1612		PK_Tyr_Ser-Thr	1.7e-48	CL0016