Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1609 ATGGCGGCCACTCGTGTGGCTTCTTCTCTCTTTCTTCCGATCGCTTTGATCTTTGCTACTCTTCATCTTTCCTTAGCCAACACTGACTCTACTGATGTTCAAGCGCTTGATGTTTTGTACAACGCTTTAAACAGCCCTTCTGGGCTAACTGGCTGGAAAATTGGTGGTGGTGATCCTTGTGGAGAGGCTTGGAAAGGAATAACATGTGAGGGCTCAGCCGTTGTTTCCATAGAATTGTCAGGTTTGGGACTTAATGGGACTCTGGGATACCTGCTTTCAGACCTTATGTCACTGAGACAACTTGACTTAAGTGACAACAAGATCCACGACACCGTCCCTTACCAGTTGCCACCAAATCTGACAAGCCTGAACCTTGCAAGAAATAACTTGAGTGGAAATCTTCCTTATTCTATTTCTGCCATGACTTCCCTCAATTATCTGAATATGAGCCACAATGCACTCGCCCTTTCAATTGGAGACATTTTTGCTAACCTTGCTGATCTCAGTACCCTGGATCTATCGTTCAACGACTTTTCTGGAGATCTCCCTCCCTCATTTGGTTCATTGTCCAATCTTTCTTCTGCCTTTTTGCAGAACAATCAGTTGACTGGTTCACTTAGTGTTCTTGTTGGCTTGCCATTAGATACTTTAAATGTCGCGAACAACAACTTCTCTGGATGGATACCTAACGAACTTAGTTCAATTCGTAGTTTCATATCTGATGGGAACTCCTTTGACAATGGGCCTGCTCCTCCTCCTCCTCCACATACAGCTCCTCCTCCCAGAAGATCTAGCCATCAACATTCTGGATCTGGCTCTAATAAAGCGCATGCTTCTGAATCTGACAAAGAAGGTGCTGATGGCCATAATGGCTTATCATCTGGGGCTATTATAGGCATTATTTTGGGTTCAATTTTTCTGGCTGTTGTTGTGCTACTTGCTCTTGCCTTATGTATCCGAAACCGTAAAAGGAAGGAAAAAGGTGTCAGGACATCGAATGGGAATCCTCCTCTTGGAACCAATAATGTGACTCTTCCGATGCAAGAACAGAGGGTAAAAAGTGCTGCTGCTGCTGTAACAGATCTGAAGCCGCCTCCTGCAGAAAAAGTGATAGCTGAGAGGGTTCCTTCGAAAAATGGATCTGTTAAGCGGATGAAATCCCCTATAACTGCTACATCATACACAATTGCTACTCTCCAAAGTGCAACAAATAGCTTCAGTCAAGAATTTATTATCGGTGAAGGTTCTCTTGGTCGAGTTTACAGGGCCGAATTCCCTAATGGGAAGATCATGGCCATTAAGAAGATCGACAATGCAGCGCTGTCATTACAGGAGGAAGACAACTTTCTTGAAGCTGTATCAAACATGTCACGCTTGCGGCATCCAAACATTATTACACTAGCCGGATACTGTGCAGAGCATGGGCAGCGACTTCTAGTTTACGAGTATATCGGTAATGGAAATCTACATGATATGTTCCACTTTGCTGAAGATAGTAGCAAGGCTTTACCTTGGAATGCTCGTGTTCGAATAGCACTTGGCACCGCTCGAGCTTTAGAGTACTTGCATGAAGTATGCTTGCCTTCTGTTGTACATAGAAACTTTAAATCGGCAAACATATTACTTGATGAGGATTTGAATCCTCACTTGTCTGATTGTGGTTTAGCTGCTTTAACGCCAAACACGGAACGGCAGGTTTCAACTCAGATGGTTGGCTCTTTTGGTTATAGTGCTCCTGAGTTTGCGCTATCAGGAATATACACAGTAAAAAGTGATGTTTACAGTTTTGGAGTGGTAATGTTAGAGCTATTGACGGGTCGGAAGCCACTTGACAGTTCACGAGCGAGATCAGAGCAATCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATAGATGCCTTGGCCAGAATGGTTGATCCTGCTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCCGATATCATTGCCCTCTGTGTTCAGCCGGAGCCTGAATTTCGACCTCCCATGTCTGAGGTTGTGCAAGCATTGGTTCGGCTAGTGCAAAGAGCAAGCGTGGTCAAACGCCGCCCCAGCGACGAATCTGGGTTTGGTCTCAAGACCCCAGATCATGAAGCCTTGGACATGTCATTTTAA 2145 0.4476 MAATRVASSLFLPIALIFATLHLSLANTDSTDVQALDVLYNALNSPSGLTGWKIGGGDPCGEAWKGITCEGSAVVSIELSGLGLNGTLGYLLSDLMSLRQLDLSDNKIHDTVPYQLPPNLTSLNLARNNLSGNLPYSISAMTSLNYLNMSHNALALSIGDIFANLADLSTLDLSFNDFSGDLPPSFGSLSNLSSAFLQNNQLTGSLSVLVGLPLDTLNVANNNFSGWIPNELSSIRSFISDGNSFDNGPAPPPPPHTAPPPRRSSHQHSGSGSNKAHASESDKEGADGHNGLSSGAIIGIILGSIFLAVVVLLALALCIRNRKRKEKGVRTSNGNPPLGTNNVTLPMQEQRVKSAAAAVTDLKPPPAEKVIAERVPSKNGSVKRMKSPITATSYTIATLQSATNSFSQEFIIGEGSLGRVYRAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIITLAGYCAEHGQRLLVYEYIGNGNLHDMFHFAEDSSKALPWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEDLNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRARSEQSLVRWATPQLHDIDALARMVDPALNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGFGLKTPDHEALDMSF 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1609 714 CDD STKc_IRAK 412 683 - -
Acco01g1609 714 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 372 483 - -
Acco01g1609 714 Gene3D Ribonuclease Inhibitor 29 252 IPR032675 -
Acco01g1609 714 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 684 IPR046959 -
Acco01g1609 714 SUPERFAMILY Protein kinase-like (PK-like) 381 680 IPR011009 -
Acco01g1609 714 Gene3D Phosphorylase Kinase; domain 1 368 483 - -
Acco01g1609 714 Gene3D Transferase(Phosphotransferase) domain 1 484 700 - -
Acco01g1609 714 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Acco01g1609 714 ProSiteProfiles Leucine-rich repeat profile. 97 118 IPR001611 GO:0005515
Acco01g1609 714 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 256 - -
Acco01g1609 714 ProSiteProfiles Protein kinase domain profile. 406 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1609 714 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Acco01g1609 714 MobiDBLite consensus disorder prediction 262 276 - -
Acco01g1609 714 MobiDBLite consensus disorder prediction 695 714 - -
Acco01g1609 714 MobiDBLite consensus disorder prediction 324 343 - -
Acco01g1609 714 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 484 694 - -
Acco01g1609 714 MobiDBLite consensus disorder prediction 243 288 - -
Acco01g1609 714 MobiDBLite consensus disorder prediction 247 261 - -
Acco01g1609 714 Pfam Protein kinase domain 409 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1609 714 SUPERFAMILY L domain-like 31 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1609 Acco-ChrAcco01 29269148 29274763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1609 141 714 Strubbelig Receptor Gene Family AT4G22130 71.528 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Acco01g1609 Pkinase 6.6e-44 CL0016