Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1603 ATGGAAGAAGGTGGTTCTAATGGGACTTCAAGTGTGATGGGTTTTGGGGGTAACAATAATAACAATAGTGGTGGTGGTGGTGGTGGGGGTTTGTGTGCTTCATCTCATCCAATGATGATGATGATGCCTTTTGTGACTACTTGTCATAATGTTTCCCATCAAATTCCATTCACTCCTAATCCTATGAATATTAATGTTCCTCCCTCACACACTACTACGCCTTTCCTTCTTCCCTCATGCACCAATACTTCTTCTACTTCTAATCATCAACCCCAGAACAACAACAATAGCAACAGCAACAGTTGTGGGTTAGTCTCCTTTCTCATGGAAGCCGCCAACAACAACAACAACGCTGGCTCTTCTTCTGCTGCTGCTGCTAAAGCAAAGATCATGGCTCATCCTCACTATCATCGTCTTTTGTCTGCCTACGTTAATTGTCAAAAGGTTGGAGCGCCGCCGGAAACGGTGGCGAGGTTAGAGGAAGCATGTGCATCTGCGTTGACAATGACCGGCGGCAGCGGAGTGTCAGGGTGTATCGGAGAAGATCCGGCACTGGATCAGTTTATGGAGGCTTATTGTGAGATGCTGACCAAATATGAGCAAGAGCTCTCTAAACCCTTCAGGGAAGCTATGCACTTCCTTCACACCATCGAGTCTCAGTTCAAATCTCTCACTATTTCTTCTTCTTCTTCAGACTTCGCTTGTGGTGAGGGTAGTGATCGGAATGGATCATCAGAGGAAGACGTGGATGTGCCGAAGAGTCTGATTGATCCACTGGCGGACGACCAAGAATTGAAGGGGCAACTTCTTCGCAAGTACAGTGGATACCTGGGCAGCCTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTCCCTAAAGAAGCAAGGCAACAGCTTCTTGATTGGTGGAGCAGGCACTACAAATGGCCTTACCCATCAGAGTCGCAGAAGCTGCAACTGGCAGAATCAACAGGATTGGATCAGAAGCAAATAAACAACTGGTTCATTAATCAAAGGAAGCGTCATTGGAAACCATCGGAGGATATGCAATTCATGGTGGTGGATCCTTCTCATCCTCATCACCACTATTACATGGACACTGTTCTTGGCAATCCCTATCCGATGATCTAG 1137 0.4661 MEEGGSNGTSSVMGFGGNNNNNSGGGGGGGLCASSHPMMMMMPFVTTCHNVSHQIPFTPNPMNINVPPSHTTTPFLLPSCTNTSSTSNHQPQNNNNSNSNSCGLVSFLMEAANNNNNAGSSSAAAAKAKIMAHPHYHRLLSAYVNCQKVGAPPETVARLEEACASALTMTGGSGVSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFREAMHFLHTIESQFKSLTISSSSSDFACGEGSDRNGSSEEDVDVPKSLIDPLADDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLQLAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHHYYMDTVLGNPYPMI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1603 378 Gene3D - 282 354 - -
Acco01g1603 378 SMART KNOX1_2 124 168 IPR005540 GO:0003677|GO:0005634
Acco01g1603 378 SUPERFAMILY Homeodomain-like 286 363 IPR009057 -
Acco01g1603 378 FunFam Homeobox protein knotted-1-like 2 289 351 - -
Acco01g1603 378 CDD homeodomain 296 348 IPR001356 GO:0003677
Acco01g1603 378 SMART ELK_2 264 285 IPR005539 GO:0003677
Acco01g1603 378 ProSiteProfiles 'Homeobox' domain profile. 284 347 IPR001356 GO:0003677
Acco01g1603 378 Pfam KNOX2 domain 178 225 IPR005541 GO:0003677|GO:0005634
Acco01g1603 378 MobiDBLite consensus disorder prediction 1 21 - -
Acco01g1603 378 Pfam ELK domain 264 285 IPR005539 GO:0003677
Acco01g1603 378 SMART HOX_1 286 351 IPR001356 GO:0003677
Acco01g1603 378 Pfam Homeobox KN domain 304 343 IPR008422 GO:0003677|GO:0006355
Acco01g1603 378 MobiDBLite consensus disorder prediction 76 97 - -
Acco01g1603 378 Pfam KNOX1 domain 127 164 IPR005540 GO:0003677|GO:0005634
Acco01g1603 378 SMART KNOX2_2 175 226 IPR005541 GO:0003677|GO:0005634
Acco01g1603 378 ProSitePatterns 'Homeobox' domain signature. 322 345 IPR017970 GO:0000981|GO:0006355
Acco01g1603 378 ProSiteProfiles ELK domain profile. 264 284 IPR005539 GO:0003677
Acco01g1603 378 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1603 Acco-ChrAcco01 29191142 29196031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1603 108 377 Homeobox Transcription Factor Family AT1G62360 75.357 1.12e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco01g1603 KNOX2 2.1e-22 No_clan