Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g1569 ATGGCGTCGGCTTCTCCTTCTCCCAATTCTTCCCCCTCTGCAGTGCCGCCAACTCCGGTGAATAACACAACACCACCACCTTCTTCACCTTCATCCACAAATTCTTCGAAGGCTCCTCCTCCTTCATCTCCTAACCCTTCAGCTAAACCTCCTTCTCCGGCAGTGCCTTCAACTCCGCCTCCTTCTCCGTCTATTTCTCCTCCTCCGCCATCACCACCGGCATCTCCTCCACCTTCAGCCCCTACAGCCCCTGCTCCAAATTCAACTTCACCAAGCCCTCCGAGATCATCCCCAACACCTCCATTGGCTGCTTCACCACCAGATCCTTCACCTCCTCCTGCAGAAAATCCTCCTCTGTCACCTATTTCTCCTATTCCTCCTCCTCCGGCCAATAACTCAACACCACCACCGTCTGGTAATCCTTCTCCGCCACGTGGAAAGCCACCGGAAAGTACTCCTTCGTCCCCTTCACCTGCACCGCCTCCATCAGTTTCTATGTCTCCTCCTCCCAAAACGCCTTCAACTCCTCCAGTCCCTCCTCCAAAGTCTTCGCATGCTCCTCCACATAATGCATCTGCAGCTAACAGGCCCCCTGCACCCCTACCCTCTTTTCCAACGGCATCGCCCACTGATAGATCATCAAATCATAGAAATACATCCTCAAAGAGCGGACCTACAAATAATGGACTAGTCACAGTTATTGGCATTATAATTGGCTTTGTTGTCCTCAGCTTTCTTGTCATGGCTGTGTGGTTTGTATGGAAACGGAAGAGGAAGGAAGCAAGACCGAAAGTTGGTTATACGCCTTCCCCTTATGCCTCATCTCATAACTCAGGCACAAGGATCTTAAGGCAACAGTCTTCCCTTTCTTATAATGGCGGAGGTAGTGATTTCGCTTATTCACCATCAGAAGCAGGTGGACTAAGTGGTTCAAGATCGTGGTTTACATATGAAGAGCTTGTCCAAGCAACAGATGGGTTTTCGGCGCAAAATCTGTTGGGTGAAGGTGGATTTGGTTGTGTCTACAAAGGCTTTCTCATGGATGGAAGAGCAGTAGCTGTGAAACAGCTCAAAGATGGAGGCGGGCAAGGGGAGCGTGAGTTTAGAGCAGAAGTTGAAACTATTAGCCGAGTACATCATCGCCACCTTGTTTCCTTGGTGGGCTACTGTATATCTGAGCATCAGAGATTGCTTGTCTATGACTATGTTCCCAACAATACCCTTCATTACCATCTTCATGCTCAAAACAGGCCAGTTATGGATTGGGCTACAAGAGTGAAGGTTGCAGTTGGTGCAGCACGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCGTTATTCACCGAGACATAAAGTCATCAAACATCCTTCTTGATCACAACTTTGAAGCTCAAGTTTCCGACTTTGGGCTTGCAAAATTAGCAATGGATTCATTTACACATGTAACCACTCGAGTGATGGGGACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGTAAACTGACTGAAAAATCAGATGTTTATTCATTTGGGGTTGTACTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCCTCTCGGCCTACTGGTGATGAGAGCCTGATTGAATGGGCTCGACCTCTATTGAATCAAGTGCTTGATTATGAAGACTATGATATACTGGTAGATCCACGACTCGAGAAGAACTATAATAGAAATGAAATGTTTCGGATGATAGAGGCTGCAGCTGCCTCTGTGCGTCACTCTGCAGCAAAAAGACCACGAATGAGTCAGGTCGCGAGAGCTTTGGATTCGATAGACGAGTTTTCAGATCTCTCTAATGGAATAAAACCTGGCCAGAGTACAACCTTTAATCTTTCACCACCATCTGCACAAGTCAGAATGTTTCAAAGGATGGTTTTCGGTGGGGCCAGTCAAGATATCAGTTCCAGTTTCTTTAACGATTCTCAGAGTAGCTGGAGAAGCAGAGACCAGGGGGACTCAACACAACATGATCTCCCAAAATAG 2019 0.476 MASASPSPNSSPSAVPPTPVNNTTPPPSSPSSTNSSKAPPPSSPNPSAKPPSPAVPSTPPPSPSISPPPPSPPASPPPSAPTAPAPNSTSPSPPRSSPTPPLAASPPDPSPPPAENPPLSPISPIPPPPANNSTPPPSGNPSPPRGKPPESTPSSPSPAPPPSVSMSPPPKTPSTPPVPPPKSSHAPPHNASAANRPPAPLPSFPTASPTDRSSNHRNTSSKSGPTNNGLVTVIGIIIGFVVLSFLVMAVWFVWKRKRKEARPKVGYTPSPYASSHNSGTRILRQQSSLSYNGGGSDFAYSPSEAGGLSGSRSWFTYEELVQATDGFSAQNLLGEGGFGCVYKGFLMDGRAVAVKQLKDGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHAQNRPVMDWATRVKVAVGAARGIAYLHEDCHPRVIHRDIKSSNILLDHNFEAQVSDFGLAKLAMDSFTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASRPTGDESLIEWARPLLNQVLDYEDYDILVDPRLEKNYNRNEMFRMIEAAAASVRHSAAKRPRMSQVARALDSIDEFSDLSNGIKPGQSTTFNLSPPSAQVRMFQRMVFGGASQDISSSFFNDSQSSWRSRDQGDSTQHDLPK 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g1569 672 PRINTS Proline rich extensin signature 38 55 - -
Acco01g1569 672 PRINTS Proline rich extensin signature 1 19 - -
Acco01g1569 672 PRINTS Proline rich extensin signature 56 81 - -
Acco01g1569 672 PRINTS Proline rich extensin signature 19 35 - -
Acco01g1569 672 FunFam Proline-rich receptor-like protein kinase PERK8 299 402 - -
Acco01g1569 672 MobiDBLite consensus disorder prediction 649 672 - -
Acco01g1569 672 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Acco01g1569 672 CDD STKc_IRAK 333 603 - -
Acco01g1569 672 SUPERFAMILY Protein kinase-like (PK-like) 308 600 IPR011009 -
Acco01g1569 672 ProSiteProfiles Protein kinase domain profile. 327 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1569 672 Gene3D Phosphorylase Kinase; domain 1 303 402 - -
Acco01g1569 672 MobiDBLite consensus disorder prediction 10 186 - -
Acco01g1569 672 MobiDBLite consensus disorder prediction 206 228 - -
Acco01g1569 672 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Acco01g1569 672 Pfam Protein tyrosine and serine/threonine kinase 330 530 IPR001245 GO:0004672|GO:0006468
Acco01g1569 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Acco01g1569 672 FunFam proline-rich receptor-like protein kinase PERK8 403 615 - -
Acco01g1569 672 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 242 642 IPR047117 -
Acco01g1569 672 SMART serkin_6 327 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g1569 672 MobiDBLite consensus disorder prediction 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g1569 Acco-ChrAcco01 28506820 28513020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g1569 205 662 Trihelix Transcription Factor Family AT5G38560 66.385 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Acco01g1569 PK_Tyr_Ser-Thr 5.1e-46 CL0016